View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13102_low_2 (Length: 341)
Name: NF13102_low_2
Description: NF13102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13102_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 50 - 292
Target Start/End: Complemental strand, 45084202 - 45083959
Alignment:
| Q |
50 |
ttgaaaaatacagtaaccgcaaagattttaatatgcattatgtagtcataatcctctctctctatatatccatcatatacctgtgatttatctacacaag |
149 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45084202 |
ttgaaaaatacagtaaccgcaaagactttaatatgcattatgtagtcataatcctctctctctatacatccatcatatacctgtgatttatctacacaag |
45084103 |
T |
|
| Q |
150 |
ttccatgtctcataaaatcatgaagagtccaagattccaaaattcctacgtaatttcctttc-----ctttgtgtatactgtagtttttatccatcgttc |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45084102 |
ttccatgtctcataaaatcatgaagagtccaagattccaaaattcctacgtaatttcctttcctttcctttgtgtatactgtagtttttatccatcgttc |
45084003 |
T |
|
| Q |
245 |
tgtcatatatatacctgttttatgccactgtttcaatggttttcgttg |
292 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45084002 |
agtc----atatacctgttttatgccactgtttcaatggttttcgttg |
45083959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 50 - 211
Target Start/End: Complemental strand, 45079902 - 45079743
Alignment:
| Q |
50 |
ttgaaaaatacagtaaccgcaaagattttaatatgcattatgtagtcataatcctctctctctatatatccatcatatacctgtgatttatctacacaag |
149 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| | || |||| ||||||||| | ||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
45079902 |
ttgaaaaatacagtaaccgcgaagattttaatatgcattttttattcatgatcctctctat--atatatctaccatatacctgttatttatctacacaag |
45079805 |
T |
|
| Q |
150 |
ttccatgtctcataaaatcatgaagagtccaagattccaaaattcctacgtaatttcctttc |
211 |
Q |
| |
|
| ||||||||||| ||| ||||||||| |||||||| |||||||||| ||||||| ||||| |
|
|
| T |
45079804 |
tgccatgtctcatcaaaatatgaagagtgcaagattcgaaaattcctatgtaattttctttc |
45079743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 204
Target Start/End: Complemental strand, 45069065 - 45068936
Alignment:
| Q |
77 |
ttaatatgcattatgtagtcataatcctctctctctatatat--ccatcatatacctgtgatttatctacacaagttccatgtctcataaaatcatgaag |
174 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||| | |||||| || || ||||||||||| | | ||||||| |
|
|
| T |
45069065 |
ttaatatgcattttgtagtcataatcctctctctctatatatatccatcacatacctgtggtaaatctacccatgtgccatgtctcatcagaacatgaag |
45068966 |
T |
|
| Q |
175 |
agtccaagattccaaaattcctacgtaatt |
204 |
Q |
| |
|
||| ||| |||| ||||||||| |||||| |
|
|
| T |
45068965 |
agtgcaatattcggaaattcctatgtaatt |
45068936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 45084254 - 45084211
Alignment:
| Q |
16 |
tcagtaaactataataaaattctatagtgctccgttgaaaaata |
59 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45084254 |
tcagtaaactataataaaattctatagtactccgttgaaaaata |
45084211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University