View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13102_low_4 (Length: 320)
Name: NF13102_low_4
Description: NF13102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13102_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 42886292 - 42886413
Alignment:
| Q |
20 |
ttaatgtcctcttctctattccttcacaaacgaatcggttaccataccgcttcaattttcctcaatgattcaacgccgcttcaatttccctctggatttg |
119 |
Q |
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| T |
42886292 |
ttaatgtcctcttctttattccttcacaaacgaatcggttaccatatcgcttcaattttcctcaacgattcaacgccgcttcaatttccctctggatttg |
42886391 |
T |
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| Q |
120 |
tgttcgccatctccgacatcgt |
141 |
Q |
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| T |
42886392 |
tgtttgccatctccgacatcgt |
42886413 |
T |
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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 43962808 - 43962880
Alignment:
| Q |
21 |
taatgtcctcttctctattccttcacaaacgaatcggttaccataccgcttcaattttcctcaatgattcaac |
93 |
Q |
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| T |
43962808 |
taatgtcctcttctctcttccttcacaaacgaattggttaccacgccgcttcagtttccttcaacgattcaac |
43962880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 38270019 - 38270055
Alignment:
| Q |
105 |
ttccctctggatttgtgttcgccatctccgacatcgt |
141 |
Q |
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| T |
38270019 |
ttccctcgggatctgtgttcgccatctccgacatcgt |
38270055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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