View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13103_high_11 (Length: 366)
Name: NF13103_high_11
Description: NF13103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13103_high_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 31594963 - 31594751
Alignment:
| Q |
19 |
gttgtaacaataattcttgtaacatgctatttacaccatgttttatgaccgacttaaaagatccactatgaccaatcttaaatttcttttctgcaccggt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
31594963 |
gttgtaacaataattcttgtaacatgctatttacaccatgttttatgaccgacttaaaagatccactataaccaatcttaaatttcttttctacaccggt |
31594864 |
T |
|
| Q |
119 |
gtgaacctcatctatatttacttccaataatcaagcttcaaaattgacgaaactaagaataaaatcttcaatcctcatcataaacatacaaacgctctta |
218 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31594863 |
gtgaacctcatctatatttactttcaataatcaagcttcaaaattgacgaaattaagaataaaatcttcaatcctcatcataaacatacaatcgctctta |
31594764 |
T |
|
| Q |
219 |
cacaatccaaacg |
231 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31594763 |
cacaatccaaacg |
31594751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 293 - 361
Target Start/End: Complemental strand, 31594697 - 31594629
Alignment:
| Q |
293 |
gtacacattaaaattcttatgtttctttctcttacaatttcacactcgattctttctatctctgctcct |
361 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||| |
|
|
| T |
31594697 |
gtacacattgaaattcttatgtttctttctcttacaatttcacactcgtttctttttatctctactcct |
31594629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University