View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13103_high_13 (Length: 307)
Name: NF13103_high_13
Description: NF13103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13103_high_13 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 110 - 307
Target Start/End: Complemental strand, 13608867 - 13608670
Alignment:
| Q |
110 |
tcatgacagtaaacatcaaatataatgacaaagtgctactgtaattaattgaaaaattcagtcaaatccttgaaaattattcgttcaatgaaacaggtaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13608867 |
tcatgacagtaaacatcaaatataatgacaaagtgctactgtaattaattgaaaaattcagtcaaatccttgaaaattattcgttcaatgaaacaggtaa |
13608768 |
T |
|
| Q |
210 |
agttttgttagtaaacttaaaagtgttgatcagcttgtggcaaacagagaaaatactacttacttatccttcatatcccaaccagagagattggctac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13608767 |
agttttgttagtaaacttaaaagtgttgatcagcttgtggcaaacagagaaaatactacttacttatccttcatatcccaaccagagagattggctac |
13608670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13608976 - 13608925
Alignment:
| Q |
1 |
tgcatattctggcctagaagaccagaggatagaaattccaaatcatcacatg |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13608976 |
tgcatattctggcctagaagaccagaggatagaaattccaaatcatcacatg |
13608925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 221 - 307
Target Start/End: Original strand, 6472890 - 6472978
Alignment:
| Q |
221 |
taaacttaaaagtgttgatcag--cttgtggcaaacagagaaaatactacttacttatccttcatatcccaaccagagagattggctac |
307 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6472890 |
taaacttaaaagtgttgatcacaacttgcggcaaacatagaaaatactacttacttatcctttatatcccaaccagagagattggctac |
6472978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 6472749 - 6472799
Alignment:
| Q |
2 |
gcatattctggcctagaagaccagaggatagaaattccaaatcatcacatg |
52 |
Q |
| |
|
||||||| || |||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
6472749 |
gcatattgtgacctaaaagaccagagaatagaaattccaaatcatcacatg |
6472799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 31244925 - 31244876
Alignment:
| Q |
1 |
tgcatattctggcctagaagaccagaggatagaaattccaaatcatcaca |
50 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
31244925 |
tgcatattgtggcctaaaagaccagaggatagaaataccaaatcatcaca |
31244876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 31244713 - 31244649
Alignment:
| Q |
243 |
cttgtggcaaacagagaaaatactacttacttatccttcatatcccaaccagagagattggctac |
307 |
Q |
| |
|
||||| ||||||| |||||| |||||||||| |||| | | ||||||||||||||| | |||||| |
|
|
| T |
31244713 |
cttgttgcaaacatagaaaagactacttactgatcccttacatcccaaccagagagttcggctac |
31244649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 294
Target Start/End: Original strand, 17599600 - 17599673
Alignment:
| Q |
221 |
taaacttaaaagtgttgatcagcttgtggcaaacagagaaaatactacttacttatccttcatatcccaaccag |
294 |
Q |
| |
|
||||||||||||||||||| | ||||| || |||| ||||||||| ||||||| |||||| |||| ||| |||| |
|
|
| T |
17599600 |
taaacttaaaagtgttgattatcttgttgctaacatagaaaatacaacttactgatcctttatattccagccag |
17599673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 294
Target Start/End: Complemental strand, 14724250 - 14724177
Alignment:
| Q |
221 |
taaacttaaaagtgttgatcagcttgtggcaaacagagaaaatactacttacttatccttcatatcccaaccag |
294 |
Q |
| |
|
|||||||||||| |||||| | ||||| || |||| ||||||||| ||||||| |||||| |||| ||| |||| |
|
|
| T |
14724250 |
taaacttaaaagcgttgattatcttgttgctaacatagaaaatacaacttactgatcctttatattccagccag |
14724177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University