View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13103_high_14 (Length: 301)
Name: NF13103_high_14
Description: NF13103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13103_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 5e-99; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 20 - 285
Target Start/End: Original strand, 12977077 - 12977342
Alignment:
| Q |
20 |
gattggatcctttggaaatacaagtcagagaactgtttcatagaattgttcgtggtagaatggaagggcttgattctcttgcttgagagtaataaaaaca |
119 |
Q |
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| T |
12977077 |
gattggatcctttggaaatacaagtcagagaagtgtttcatagaattgttcatggtagaatggaagggcttgattctcttgcttgagagtaataaaaaca |
12977176 |
T |
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| Q |
120 |
ttagatttagatgccataaacttgatggaataaccataaaagatatagttatgtnnnnnnnnnccttaacatacataaattgtatagagtttgtatcccn |
219 |
Q |
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| T |
12977177 |
ttagatttagatgccataaacttgatggaataaccataaaagatttagttatgtaaaaaaaaaccttaacatacataaattgtatagattttgtaaccca |
12977276 |
T |
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| Q |
220 |
nnnnnnntaggtgtagagtttaggtttggaattaggccttcgaggtctatgctctttgattttgtc |
285 |
Q |
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| T |
12977277 |
aaaaaaataggtatagaatttaggtttggaattaggccttcgtggtctatgctctttgattttgtc |
12977342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 20 - 289
Target Start/End: Original strand, 13013034 - 13013311
Alignment:
| Q |
20 |
gattggatcctttggaaatacaagtcagagaactgtttcatagaattgttcgtggtagaatggaagggcttgattctctt-gcttgagagtaataaaaac |
118 |
Q |
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| T |
13013034 |
gattggatcctttcgtaatacaagtcagagaagtgtttcatagaattgttcgtggtagaatggaagggcttgattgtctttgcttgagagtaataaaaac |
13013133 |
T |
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| Q |
119 |
attagatttagatgccataaacttgatggaataaccataaaagatatagttatgtnnnnnnnnnccttaacatacataaattgtatagagtttgtatccc |
218 |
Q |
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| T |
13013134 |
attagatttagatgccataatcttgatggaataaccataaaagatatagttatgtaaaaaaaaaccttaacatacataaattgtatagagtttgtaaccc |
13013233 |
T |
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| Q |
219 |
-------nnnnnnnntaggtgtagagtttaggtttggaattaggccttcgaggtctatgctctttgattttgtccctt |
289 |
Q |
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| T |
13013234 |
aaaaaaaaaaaaaaataggtatagagtttaggtttggaattaggccttcgtggtctatgatctttgattttgtccctt |
13013311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 13009476 - 13009623
Alignment:
| Q |
20 |
gattggatcctttggaaatacaagtcagagaactgtttcatagaattgttcgtggtagaatggaagggcttgattctcttgcttgagagtaataaaaaca |
119 |
Q |
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|||||||||||||||||| |||||| |||||| | |||||||||||||||||||||||||||||||||||||||||| || ||| | |||||| |||||| |
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| T |
13009476 |
gattggatcctttggaaagacaagttagagaagtatttcatagaattgttcgtggtagaatggaagggcttgattctgtttcttaaaagtaattaaaaca |
13009575 |
T |
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| Q |
120 |
ttagatttagatgccataaacttgatggaataaccataaaagatatag |
167 |
Q |
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| T |
13009576 |
ttagatttagatgccataaacttgatggaacaaccataaaagatatag |
13009623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 13031834 - 13031941
Alignment:
| Q |
20 |
gattggatcctttggaaatacaagtcagagaactgtttcatagaattgttcgtggtagaatggaagggcttgattctcttgcttgagagtaataaaaaca |
119 |
Q |
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|||||||||||||||||| |||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||||| |
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| T |
13031834 |
gattggatcctttggaaagacaagttagagaagtgtttcatagaattgtttgtggtagaatggaagggcttgattcctttggttcagagtaataaaaaca |
13031933 |
T |
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| Q |
120 |
ttagattt |
127 |
Q |
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| T |
13031934 |
taagattt |
13031941 |
T |
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