View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13103_high_21 (Length: 239)

Name: NF13103_high_21
Description: NF13103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13103_high_21
NF13103_high_21
[»] chr1 (3 HSPs)
chr1 (1-113)||(32109880-32109992)
chr1 (9-104)||(24428151-24428246)
chr1 (1-113)||(32922550-32922664)
[»] chr5 (2 HSPs)
chr5 (1-116)||(17237969-17238086)
chr5 (1-75)||(32296414-32296488)
[»] chr8 (3 HSPs)
chr8 (11-116)||(8783017-8783126)
chr8 (1-116)||(17834687-17834804)
chr8 (1-116)||(10259905-10260022)
[»] chr2 (1 HSPs)
chr2 (1-110)||(5848609-5848720)
[»] chr7 (5 HSPs)
chr7 (1-110)||(13596397-13596508)
chr7 (1-116)||(22910650-22910767)
chr7 (1-116)||(23040581-23040698)
chr7 (21-116)||(26754380-26754477)
chr7 (9-65)||(48858927-48858983)
[»] chr4 (1 HSPs)
chr4 (1-105)||(48026636-48026742)
[»] chr3 (2 HSPs)
chr3 (1-75)||(20684881-20684955)
chr3 (1-46)||(53580759-53580804)
[»] scaffold0913 (1 HSPs)
scaffold0913 (1-57)||(3050-3106)
[»] scaffold0898 (1 HSPs)
scaffold0898 (1-57)||(2495-2551)
[»] chr6 (1 HSPs)
chr6 (12-116)||(15609643-15609749)


Alignment Details
Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 32109880 - 32109992
Alignment:
Q  1 atatggagagcaagaatattatcttcaaagcattgcaagatttattcaaggaagatgcaactttaatttgttgtgctgtagtgtatctagaaacaaagaa 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32109880 atatggagagcaagaatattatcttcaaagcattacaagatttatccaaggaagatgcaactttaatttgttgtgttgtagtgtatctagaaacaaagaa 32109979  T
Q  101 acaacagagtatg 113  Q
    ||||| |||||||    
T  32109980 acaaccgagtatg 32109992  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 24428246 - 24428151
Alignment:
Q  9 agcaagaatattatcttcaaagcattgcaagatttattcaaggaagatgcaactttaatttgttgtgctgtagtgtatctagaaacaaagaaacaa 104  Q
    |||||||||||||| ||||||||||| || |||||||  |||||||||||  ||||| ||||||||| ||| | ||||||  ||||||||||||||    
T  24428246 agcaagaatattattttcaaagcattacatgatttatctaaggaagatgcggctttattttgttgtgttgtggagtatctgaaaacaaagaaacaa 24428151  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 32922550 - 32922664
Alignment:
Q  1 atatggagagcaagaatattatcttcaaagcattgcaagatttattcaaggaagatgcaactttaatttgt--tgtgctgtagtgtatctagaaacaaag 98  Q
    ||||||| |||||||||||||||||||||||||| || |||||||  ||||||||||   ||||| |||||  |||| ||| | |||| |  ||||||||    
T  32922550 atatggatagcaagaatattatcttcaaagcattacacgatttatctaaggaagatgtgcctttattttgttgtgtgttgtggagtatttgaaaacaaag 32922649  T
Q  99 aaacaacagagtatg 113  Q
    |||||| ||||||||    
T  32922650 aaacaatagagtatg 32922664  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 17238086 - 17237969
Alignment:
Q  1 atatggagagcaagaatattatcttcaaagcattgcaagatttattcaaggaagatgcaactttaatttgttg--tgctgtagtgtatctagaaacaaag 98  Q
    ||||||| ||||||||||||||||||||| |||| ||||||||||  ||| | |||||||||||| |||||||  || ||| | |||| | |||||||||    
T  17238086 atatggatagcaagaatattatcttcaaaacattacaagatttatctaagaaggatgcaactttattttgttgtatgttgtggagtatatggaaacaaag 17237987  T
Q  99 aaacaacagagtatggaa 116  Q
    |||||||||||| |||||    
T  17237986 aaacaacagagtgtggaa 17237969  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 32296488 - 32296414
Alignment:
Q  1 atatggagagcaagaatattatcttcaaagcattgcaagatttattcaaggaagatgcaactttaatttgttgtg 75  Q
    ||||||| |||||||||||||| ||||||||||| || |||||||  |||||||||||  ||||| |||| ||||    
T  32296488 atatggatagcaagaatattattttcaaagcattacaggatttatctaaggaagatgcggctttattttgctgtg 32296414  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 8783017 - 8783126
Alignment:
Q  11 caagaatattatcttcaaagcattgcaagatttattcaaggaagatgcaactttaatttgt----tgtgctgtagtgtatctagaaacaaagaaacaaca 106  Q
    |||||||||||||||| |||||||  |||||||||||||||||||||   ||||| ||| |    |||||||| | ||||||||||||||||||||||||    
T  8783017 caagaatattatcttctaagcattaaaagatttattcaaggaagatgaggctttattttttgctgtgtgctgtggagtatctagaaacaaagaaacaaca 8783116  T
Q  107 gagtatggaa 116  Q
    |||| |||||    
T  8783117 gagtgtggaa 8783126  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 17834804 - 17834687
Alignment:
Q  1 atatggagagcaagaatattatcttcaaagcattgcaagatttattcaaggaagatgcaactttaatttgt--tgtgctgtagtgtatctagaaacaaag 98  Q
    ||||||| |||||||||||||||||||||||||  || |||||||  ||||| |||||| ||||| |||||  |||| ||| | |||| | |||||||||    
T  17834804 atatggatagcaagaatattatcttcaaagcatcacaggatttatctaaggacgatgcagctttattttgttgtgtgttgtggagtatatggaaacaaag 17834705  T
Q  99 aaacaacagagtatggaa 116  Q
    |||||| ||||| |||||    
T  17834704 aaacaagagagtgtggaa 17834687  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 10259905 - 10260022
Alignment:
Q  1 atatggagagcaagaatattatcttcaaagcattgcaagatttattcaaggaagatgcaactttaatttgtt--gtgctgtagtgtatctagaaacaaag 98  Q
    ||||||| ||||||||| |||||||||| ||||| || |||||||  ||||| |||| ||||||| ||||||  ||| ||| | |||| | |||||||||    
T  10259905 atatggatagcaagaatcttatcttcaatgcattacatgatttatctaaggacgatgtaactttattttgttctgtgttgtggagtatatggaaacaaag 10260004  T
Q  99 aaacaacagagtatggaa 116  Q
    |||||||| ||| |||||    
T  10260005 aaacaacaaagtgtggaa 10260022  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 5848609 - 5848720
Alignment:
Q  1 atatggagagcaagaatattatcttcaaagcattgcaagatttattcaaggaagatgcaactttaatttgt--tgtgctgtagtgtatctagaaacaaag 98  Q
    ||||||| |||||||||||||||||||||||||| || |||||||  || || |||||| ||||| |||||  |||| ||| | |||| | |||||||||    
T  5848609 atatggatagcaagaatattatcttcaaagcattacatgatttatctaatgacgatgcatctttattttgttgtgtgttgtggagtatatggaaacaaag 5848708  T
Q  99 aaacaacagagt 110  Q
    ||||||||||||    
T  5848709 aaacaacagagt 5848720  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 13596397 - 13596508
Alignment:
Q  1 atatggagagcaagaatattatcttcaaagcattgcaagatttattcaaggaagatgcaactttaatttgttgtgctgtagtg---tatctagaaacaaa 97  Q
    ||||||| | |||||||||||||||||||| ||| || |||||||  ||||| |||||||||||| ||||||||| ||| |||   ||| | ||||||||    
T  13596397 atatggataacaagaatattatcttcaaagtattacatgatttatctaaggatgatgcaactttattttgttgtg-tgttgtggactatgtggaaacaaa 13596495  T
Q  98 gaaacaacagagt 110  Q
    |||||||||||||    
T  13596496 gaaacaacagagt 13596508  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 22910650 - 22910767
Alignment:
Q  1 atatggagagcaagaatattatcttcaaagcattgcaagatttattcaaggaagatgcaactttaatttgt--tgtgctgtagtgtatctagaaacaaag 98  Q
    ||||||| || ||||||||||| ||||||||||| || |||||||  || ||||||||| ||||| |||||  |||| ||| | |||| |||||||||||    
T  22910650 atatggatagtaagaatattattttcaaagcattacatgatttatctaatgaagatgcagctttattttgttgtgtgttgtggagtatatagaaacaaag 22910749  T
Q  99 aaacaacagagtatggaa 116  Q
    |||||||| ||| |||||    
T  22910750 aaacaacaaagtgtggaa 22910767  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 23040698 - 23040581
Alignment:
Q  1 atatggagagcaagaatattatcttcaaagcattgcaagatttattcaaggaagatgcaactttaatttgt--tgtgctgtagtgtatctagaaacaaag 98  Q
    ||||||| |||||||||||||| ||||||||||| || |||||||  || ||||||||| ||||| |||||  |||| ||| | |||| | |||||||||    
T  23040698 atatggatagcaagaatattattttcaaagcattacaggatttatctaatgaagatgcagctttattttgttgtgtgttgtggagtatatggaaacaaag 23040599  T
Q  99 aaacaacagagtatggaa 116  Q
    |||||||| ||| |||||    
T  23040598 aaacaacaaagtgtggaa 23040581  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 26754380 - 26754477
Alignment:
Q  21 atcttcaaagcattgcaagatttattcaaggaagatgcaactttaatttgttgtg--ctgtagtgtatctagaaacaaagaaacaacagagtatggaa 116  Q
    |||||||||||||| ||||||||||  || ||||||||| ||||| |||||||||   ||| | ||||||||||||||||||| |||||||| |||||    
T  26754380 atcttcaaagcattacaagatttatctaaagaagatgcagctttattttgttgtgtattgtggcgtatctagaaacaaagaaataacagagtgtggaa 26754477  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 48858927 - 48858983
Alignment:
Q  9 agcaagaatattatcttcaaagcattgcaagatttattcaaggaagatgcaacttta 65  Q
    ||||||| |||||||||||||||||| || |||||||  ||||||||||||||||||    
T  48858927 agcaagagtattatcttcaaagcattacatgatttatctaaggaagatgcaacttta 48858983  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 48026742 - 48026636
Alignment:
Q  1 atatggagagcaagaatattatcttcaaagcattgcaagatttattcaaggaagatgcaactttaatttgt--tgtgctgtagtgtatctagaaacaaag 98  Q
    ||||||| | |||||||||||||||||||||||| || |||||||  ||||| |||||| ||||| |||||  |||| ||| | |||| | |||||||||    
T  48026742 atatggataacaagaatattatcttcaaagcattacatgatttatctaaggacgatgcatctttattttgttgtgtgttgtggagtatatggaaacaaag 48026643  T
Q  99 aaacaac 105  Q
    |||||||    
T  48026642 aaacaac 48026636  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 20684881 - 20684955
Alignment:
Q  1 atatggagagcaagaatattatcttcaaagcattgcaagatttattcaaggaagatgcaactttaatttgttgtg 75  Q
    ||||||| | |||||||||||| ||||||||||| ||||||||||  ||||||||||| |||||| |||| ||||    
T  20684881 atatggataacaagaatattattttcaaagcattacaagatttatctaaggaagatgcgactttattttgctgtg 20684955  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 53580759 - 53580804
Alignment:
Q  1 atatggagagcaagaatattatcttcaaagcattgcaagatttatt 46  Q
    ||||||| |||||||||||||| ||||||||||| || ||||||||    
T  53580759 atatggatagcaagaatattattttcaaagcattacaggatttatt 53580804  T

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Target: scaffold0913 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0913
Description:

Target: scaffold0913; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 3050 - 3106
Alignment:
Q  1 atatggagagcaagaatattatcttcaaagcattgcaagatttattcaaggaagatg 57  Q
    ||||||| | ||||||||||||||||||| |||| ||||||||||  ||||||||||    
T  3050 atatggatatcaagaatattatcttcaaaacattacaagatttatctaaggaagatg 3106  T

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Target: scaffold0898 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 2551 - 2495
Alignment:
Q  1 atatggagagcaagaatattatcttcaaagcattgcaagatttattcaaggaagatg 57  Q
    ||||||| | ||||||||||||||||||| |||| ||||||||||  ||||||||||    
T  2551 atatggatatcaagaatattatcttcaaaacattacaagatttatctaaggaagatg 2495  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 15609643 - 15609749
Alignment:
Q  12 aagaatattatcttcaaagcattgcaagatttattcaaggaagatgcaactttaatttgt--tgtgctgtagtgtatctagaaacaaagaaacaacagag 109  Q
    ||||||| ||| ||||||||||| ||||||||||  ||||| ||| | |||||| |||||  |||| ||||| |||||| |||| | |||||||||| ||    
T  15609643 aagaatactatgttcaaagcattacaagatttatctaaggacgatacgactttattttgttgtgtgttgtagagtatctggaaatagagaaacaacaaag 15609742  T
Q  110 tatggaa 116  Q
    | |||||    
T  15609743 tgtggaa 15609749  T

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