View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13103_high_24 (Length: 224)
Name: NF13103_high_24
Description: NF13103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13103_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 41646003 - 41645790
Alignment:
| Q |
1 |
tccaatactctccatagggtgaaaaggcaatgtcagtgcaaccataagaaacaatttctagaccaagagaacgaggtctttgtggaaatatgacttcatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41646003 |
tccaatactctccatagggtgaaaaggcaatgtcagtgcaaccataagaaacaatttctagaccaagagaacgaggtctttgtggaaatatgacttcatt |
41645904 |
T |
|
| Q |
101 |
tgttttcaacacctcttgggcaatttctttggaagagaccactatgactgaagtctctccaagttgtaggtgcatgagagggccatatttttgggacaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41645903 |
tgttttcaacacctcttgggcaatttctttggaagagaccactatgactgaagtctctccaagttgtaggtgcatgagagggccatatttttgggacaat |
41645804 |
T |
|
| Q |
201 |
tctctcattctgtg |
214 |
Q |
| |
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|||||||||||||| |
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| T |
41645803 |
tctctcattctgtg |
41645790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 41653205 - 41652992
Alignment:
| Q |
1 |
tccaatactctccatagggtgaaaaggcaatgtcagtgcaaccataagaaacaatttctagaccaagagaacgaggtctttgtggaaatatgacttcatt |
100 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||| || |||||||| |||||| ||| |||||| |
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| T |
41653205 |
tccaatactctccatagggggaaaaagcaatgtcagtgcaaccataagaaacaatttctaaaccaagagagcgtggtctttgcggaaatgtgatttcatt |
41653106 |
T |
|
| Q |
101 |
tgttttcaacacctcttgggcaatttctttggaagagaccactatgactgaagtctctccaagttgtaggtgcatgagagggccatatttttgggacaat |
200 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
41653105 |
tgttttcaacacctctttggcaatttcttttgaagagaccactatggctgaagtctctccaagttttaggtgcatgagaggaccatatttttgggacaat |
41653006 |
T |
|
| Q |
201 |
tctctcattctgtg |
214 |
Q |
| |
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|||||||| ||||| |
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| T |
41653005 |
tctctcatgctgtg |
41652992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 96 - 211
Target Start/End: Original strand, 41623897 - 41624012
Alignment:
| Q |
96 |
tcatttgttttcaacacctcttgggcaatttctttggaagagaccactatgactgaagtctctccaagttgtaggtgcatgagagggccatatttttggg |
195 |
Q |
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||||||||||||| |||| ||| |||||||||||| |||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
41623897 |
tcatttgttttcatcaccactttggcaatttctttagaagagaccactatagttgaagtttctccaagttttaggtgcatgagagggccatatttttggg |
41623996 |
T |
|
| Q |
196 |
acaattctctcattct |
211 |
Q |
| |
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|||||||||||||||| |
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| T |
41623997 |
acaattctctcattct |
41624012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 2432023 - 2431813
Alignment:
| Q |
1 |
tccaatactctccatagggtgaaaaggcaatgtcagtgcaaccataagaaacaatttctagaccaagagaacgaggtctttgtggaaatatgacttcatt |
100 |
Q |
| |
|
||||||| |||||||||| || |||| |||||| |||| |||||||||||||||||| ||||||| ||||||||||||| | |||| | || ||||| |
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| T |
2432023 |
tccaataatctccataggatgcaaagacaatgttggtgctaccataagaaacaatttcagcaccaagaaaacgaggtctttgagaaaatgtaacatcatt |
2431924 |
T |
|
| Q |
101 |
tgttttcaacacctcttgggcaatttctttggaagagaccactatgactgaagtctctccaagttgtaggtgcatgagagggccatatttttgggacaat |
200 |
Q |
| |
|
||||| |||| ||||| |||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||| ||| ||||| ||| |||||||| |
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| T |
2431923 |
ggttttgaacaactctttggcaatttctttagaagaaaccactatggctgaagtctctccaagttgtaggtgcatgataggaccatactttagggacaat |
2431824 |
T |
|
| Q |
201 |
tctctcattct |
211 |
Q |
| |
|
||||||||||| |
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|
| T |
2431823 |
tctctcattct |
2431813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 12439463 - 12439669
Alignment:
| Q |
1 |
tccaatactctccatagggtgaaaaggcaatgtcagtgcaaccataagaaacaatttctagaccaagagaacgaggtctttgtggaaatatgacttcatt |
100 |
Q |
| |
|
||||||| ||||||||||||||||| ||| || ||||||||||||| ||||||||| ||||| | | ||| |||||| | |||| ||| ||||| |
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| T |
12439463 |
tccaatagtctccatagggtgaaaacacaaggttggtgcaaccataagttacaatttctgcaccaataaagcgatatctttgagcaaatttgagatcatt |
12439562 |
T |
|
| Q |
101 |
tgttttcaacacctcttgggcaatttctttggaagagaccactatgactgaagtctctccaagttgtaggtgcatgagagggccatatttttgggacaat |
200 |
Q |
| |
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||||| | ||||||||| ||||||||||| ||||| | |||||| |||||| || ||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
12439563 |
ggttttgagcacctcttgtgcaatttctttagaagaaataactatggttgaagtttcaccaagttgtaggtgcatgatagggccatattttttggacaat |
12439662 |
T |
|
| Q |
201 |
tctctca |
207 |
Q |
| |
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||||||| |
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|
| T |
12439663 |
tctctca |
12439669 |
T |
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