View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13103_high_27 (Length: 203)

Name: NF13103_high_27
Description: NF13103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13103_high_27
NF13103_high_27
[»] chr5 (2 HSPs)
chr5 (31-187)||(27205727-27205883)
chr5 (31-187)||(27210192-27210348)
[»] chr4 (2 HSPs)
chr4 (31-187)||(26897314-26897469)
chr4 (31-187)||(26901776-26901931)
[»] chr3 (4 HSPs)
chr3 (31-187)||(24047081-24047237)
chr3 (31-187)||(23674805-23674961)
chr3 (31-187)||(23679310-23679466)
chr3 (31-187)||(24051547-24051703)
[»] chr1 (2 HSPs)
chr1 (31-187)||(26406691-26406847)
chr1 (31-187)||(26411157-26411313)
[»] chr8 (1 HSPs)
chr8 (31-141)||(24859182-24859292)


Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 31 - 187
Target Start/End: Original strand, 27205727 - 27205883
Alignment:
Q  31 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27205727 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 27205826  T
Q  131 acatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaaa 187  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27205827 acatactgcttacgttcaacttagcattacaaagcctttatataggctagaaggaaa 27205883  T

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Target: chr5; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 31 - 187
Target Start/End: Original strand, 27210192 - 27210348
Alignment:
Q  31 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 130  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27210192 attatactattgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 27210291  T
Q  131 acatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaaa 187  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  27210292 acatactacttacgttcaacttagcattacaaagcctttatatagactagaaggaaa 27210348  T

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Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 31 - 187
Target Start/End: Original strand, 26897314 - 26897469
Alignment:
Q  31 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26897314 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 26897413  T
Q  131 acatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaaa 187  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26897414 acatactgcttac-ttcaacttagcattacaaagcctttatataggctagaaggaaa 26897469  T

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Target: chr4; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 31 - 187
Target Start/End: Original strand, 26901776 - 26901931
Alignment:
Q  31 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26901776 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 26901875  T
Q  131 acatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaaa 187  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26901876 acatactgcttac-ttcaacttagcattacaaagcctttatataggctagaaggaaa 26901931  T

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Target: chr3 (Bit Score: 141; Significance: 4e-74; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 31 - 187
Target Start/End: Complemental strand, 24047237 - 24047081
Alignment:
Q  31 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 130  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24047237 attatactgttgcaggatcttgagcggaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc 24047138  T
Q  131 acatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaaa 187  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24047137 acatactgcttactttcaacttagcattacaaagcctttatataggctagaaggaaa 24047081  T

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Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 31 - 187
Target Start/End: Complemental strand, 23674961 - 23674805
Alignment:
Q  31 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 130  Q
    |||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23674961 attatactgttgcaggatcttgagcgaaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc 23674862  T
Q  131 acatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaaa 187  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23674861 acatactgcttactttcaacttagcattacaaagcctttatataggctagaaggaaa 23674805  T

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Target: chr3; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 31 - 187
Target Start/End: Complemental strand, 23679466 - 23679310
Alignment:
Q  31 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 130  Q
    |||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23679466 attatactgttgcaggatcttgagcgaaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc 23679367  T
Q  131 acatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaaa 187  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23679366 acatactgcttactttcaacttagcattacaaagcctttatataggctagaaggaaa 23679310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 31 - 187
Target Start/End: Complemental strand, 24051703 - 24051547
Alignment:
Q  31 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 130  Q
    |||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24051703 attatactgttgcaggatcttgagcgaaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc 24051604  T
Q  131 acatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaaa 187  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24051603 acatactgcttactttcaacttagcattacaaagcctttatataggctagaaggaaa 24051547  T

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Target: chr1 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 31 - 187
Target Start/End: Complemental strand, 26406847 - 26406691
Alignment:
Q  31 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 130  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26406847 attatactgttgcaggatcttgagcggaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc 26406748  T
Q  131 acatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaaa 187  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26406747 acatactgcttactttcaacttagcattacaaagcctttatataggctagaaggaaa 26406691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 31 - 187
Target Start/End: Complemental strand, 26411313 - 26411157
Alignment:
Q  31 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 130  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26411313 attatactgttgcaggatcttgagcggaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc 26411214  T
Q  131 acatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaaa 187  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26411213 acatactgcttactttcaacttagcattacaaagcctttatataggctagaaggaaa 26411157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 24859292 - 24859182
Alignment:
Q  31 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24859292 attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc 24859193  T
Q  131 acatactgctt 141  Q
     ||||||||||    
T  24859192 gcatactgctt 24859182  T

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