View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13103_high_3 (Length: 514)

Name: NF13103_high_3
Description: NF13103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13103_high_3
NF13103_high_3
[»] chr4 (7 HSPs)
chr4 (3-317)||(38220096-38220409)
chr4 (3-317)||(38242951-38243262)
chr4 (3-117)||(38237976-38238090)
chr4 (3-122)||(38226437-38226556)
chr4 (8-134)||(38214063-38214187)
chr4 (3-117)||(38253304-38253418)
chr4 (28-117)||(38248176-38248264)
[»] chr5 (4 HSPs)
chr5 (339-499)||(33730279-33730439)
chr5 (339-448)||(33801355-33801464)
chr5 (444-499)||(33801662-33801717)
chr5 (353-499)||(6153177-6153337)
[»] chr6 (2 HSPs)
chr6 (3-117)||(17454533-17454647)
chr6 (3-117)||(17433454-17433568)


Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 3 - 317
Target Start/End: Original strand, 38220096 - 38220409
Alignment:
Q  3 agatcacatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgata 102  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38220096 agatcacataaccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgata 38220195  T
Q  103 ctcaacctgaaacaattaaaatccatattgctttactatataatacccaacactggattagtgttacatttcagagttaaatcgagattgagacaaacaa 202  Q
    |||||||||||||||  ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38220196 ctcaacctgaaacaaagaaa-tccatattgctttactatataatacccaacattggattagtgttacatttcagagttaaatcgagattgagacaaacaa 38220294  T
Q  203 actacaaatttggattccttgcaatctcgagactctacattcacgcaatcgacatagactgttggttcaagatcggacggtcctagatttcaagctaggt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38220295 actacaaatttggattccttgcaatctcgagactctacattcacgcaatcgacatagactgttggttcaagatcggacggtcctagatttcaatctaggt 38220394  T
Q  303 attttggatgttaat 317  Q
    ||||||||| |||||    
T  38220395 attttggattttaat 38220409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 3 - 317
Target Start/End: Original strand, 38242951 - 38243262
Alignment:
Q  3 agatcacatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgata 102  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||| | ||| |||||| |||| |||| ||||||||||||||    
T  38242951 agatcacatatccaccagtttgaaatgggagacttgtcctcttcacatgaacacacccattttcctccctatggtctgtgctgcaagattcaacttgata 38243050  T
Q  103 ctcaacctgaaacaattaaaatccatattgctttactatataatacccaacactggattagtgttacatttcagagttaaatcgagattgagacaaacaa 202  Q
    ||||| |||||||||  ||| ||||| |||||   |  ||| |||||||||| |||  ||||||||||||| ||||||||||||||||||||||||| ||    
T  38243051 ctcaatctgaaacaaagaaa-tccatgttgct---cactatgatacccaacaatgggctagtgttacatttaagagttaaatcgagattgagacaaataa 38243146  T
Q  203 actacaaatttggattccttgcaatctcgagactctacattcacgcaatcgacatagactgttggttc-aagatcggacggtcctagatttcaagctagg 301  Q
    | ||| ||||||||||||| |||  |  ||||||||||||||||||||||  || ||||||||||  | |||||| || |||||||||||||||||| ||    
T  38243147 attactaatttggattcctagcagccgagagactctacattcacgcaatcagcacagactgttggaccaaagatcagaaggtcctagatttcaagctcgg 38243246  T
Q  302 tattttggatgttaat 317  Q
    |||||||||| |||||    
T  38243247 tattttggattttaat 38243262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 38237976 - 38238090
Alignment:
Q  3 agatcacatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgata 102  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||   |||||| |||||||||| |||| |||| ||||||||||||||    
T  38237976 agatcatatagccaccagtttgaaatgggagacttgtcctcttcacatgaacacaggaatttccctccttatggtctgtgctgcaagattcaacttgata 38238075  T
Q  103 ctcaacctgaaacaa 117  Q
    ||||  |||||||||    
T  38238076 ctcattctgaaacaa 38238090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 38226437 - 38226556
Alignment:
Q  3 agatcacatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgata 102  Q
    |||||||||||||||||||||| | |||||||||| |||||||||||| ||||||||||||||  || ||||||| ||||  ||| ||||||||||||||    
T  38226437 agatcacatagccaccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgata 38226536  T
Q  103 ctcaacctgaaacaattaaa 122  Q
    ||||  ||||||||| ||||    
T  38226537 ctcagtctgaaacaaataaa 38226556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 134
Target Start/End: Original strand, 38214063 - 38214187
Alignment:
Q  8 acatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaa 107  Q
    ||||||||||||||||| | |||||||||| ||||| |||||||||||||||||||||     ||||| | |||||| || |||||||||||||||||||    
T  38214063 acatagccaccagtttgtagtgggagacttgtcctcatcacatgaacacaaccatttctcaaattatgatctgtggtacaagattcaacttgatactcaa 38214162  T
Q  108 cctgaaacaattaaaatccatattgct 134  Q
    ||||||||||  ||||||||| |||||    
T  38214163 cctgaaacaa--aaaatccatgttgct 38214187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 38253304 - 38253418
Alignment:
Q  3 agatcacatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgata 102  Q
    |||||||||||||||| ||||| | |||||||||| |||| || ||||||||||| |||||||| ||||| || | | || |||| |||| ||||| |||    
T  38253304 agatcacatagccaccggtttgtagtgggagacttgtcctttttacatgaacacacccatttccctccttttgatctatgctgcaagatttaacttcata 38253403  T
Q  103 ctcaacctgaaacaa 117  Q
    |||||||||||||||    
T  38253404 ctcaacctgaaacaa 38253418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 38248176 - 38248264
Alignment:
Q  28 tgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaaacaa 117  Q
    |||||||||| |||| |||||||||||||| |||||||| ||||  || | |||| |||| |||||||| ||||||||||||||||||||    
T  38248176 tgggagacttgtccttttcacatgaacacacccatttccctcctattgatctgtgctgcaagattcaac-tgatactcaacctgaaacaa 38248264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 153; Significance: 7e-81; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 339 - 499
Target Start/End: Original strand, 33730279 - 33730439
Alignment:
Q  339 ttttacatcgtcttgccaatcctctgaattagttatccaatctatgtgctcttgagagtgaagtagccgattttgagtggcccagtaatcaagctgtgtg 438  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33730279 ttttacctcgtcttgccaatcctctgaattagttatccaatctatgtgctcttgagagtgaagtagccgattttgagtgacccagtaatcaagctgtgtg 33730378  T
Q  439 acatatatttgtaaagtacatgaaagtaatgtgatgaattcaaaatggtacatatcaagat 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33730379 acatatatttgtaaagtacatgaaagtaatgtgatgaattcaaaatggtacatatcaagat 33730439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 339 - 448
Target Start/End: Original strand, 33801355 - 33801464
Alignment:
Q  339 ttttacatcgtcttgccaatcctctgaattagttatccaatctatgtgctcttgagagtgaagtagccgattttgagtggcccagtaatcaagctgtgtg 438  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33801355 ttttacctcgtcttgccaatcctctgaattagttatccaatctatgtgctcttgagagtgaagtagccgattttgagtggcccagtaatcaagctgtgtg 33801454  T
Q  439 acatatattt 448  Q
    ||||||||||    
T  33801455 acatatattt 33801464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 444 - 499
Target Start/End: Original strand, 33801662 - 33801717
Alignment:
Q  444 tatttgtaaagtacatgaaagtaatgtgatgaattcaaaatggtacatatcaagat 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33801662 tatttgtaaagtacatgaaagtaatgtgatgaattcaaaatggtacatatcaagat 33801717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 353 - 499
Target Start/End: Complemental strand, 6153337 - 6153177
Alignment:
Q  353 gccaatcctctgaattagttatccaatctatgtgctcttgagagtgaagtagccgattttgagtggcccagtaatcaag------------ctgtgtgac 440  Q
    |||| |||||||||||||| |||| ||||||| |||||||||| |||||   |||||||||||||||||||||||||||            |||||||||    
T  6153337 gccagtcctctgaattagtcatccgatctatgcgctcttgagaatgaagccaccgattttgagtggcccagtaatcaagtaccgaaaagttctgtgtgac 6153238  T
Q  441 atatatttgtaaagtacatgaaagtaatgtga--tgaattcaaaatggtacatatcaagat 499  Q
    ||||||||| | | ||||||||||||| ||||  ||| ||||||||||| |||||||||||    
T  6153237 atatatttgcagaatacatgaaagtaacgtgatgtgagttcaaaatggtgcatatcaagat 6153177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 17454533 - 17454647
Alignment:
Q  3 agatcacatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgata 102  Q
    |||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||| |||| ||||| |||| |||| ||||||||||||||    
T  17454533 agatcacatagccaccagtttgcagtgggagacttgtcctcttcacatgaacacaaccatttccctcctcatggtctgtgctgcaagattcaacttgata 17454632  T
Q  103 ctcaacctgaaacaa 117  Q
    ||||| |||||||||    
T  17454633 ctcaatctgaaacaa 17454647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 17433454 - 17433568
Alignment:
Q  3 agatcacatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgata 102  Q
    |||||||||| ||||||||||| | |||||||||| |||||||||||||||||||||||||| | |||| ||||| | || |||| ||||||||||||||    
T  17433454 agatcacatatccaccagtttgtagtgggagacttgtcctcttcacatgaacacaaccattttcctcctcatggtctctgctgcaagattcaacttgata 17433553  T
Q  103 ctcaacctgaaacaa 117  Q
    ||||| |||||||||    
T  17433554 ctcaatctgaaacaa 17433568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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