View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13103_high_7 (Length: 466)
Name: NF13103_high_7
Description: NF13103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13103_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Complemental strand, 3132347 - 3131912
Alignment:
| Q |
18 |
acaaatgtagtaaccaaccactaattaaaccacttaaagccttcttttgattaggaggaaaggtgagtgctactcagggcatacctgcacacgaccctca |
117 |
Q |
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| T |
3132347 |
acaaatgtagtaaccaaccactaattaaaccacttaaagccttcttttgattaggaggaaaggtgagtgctactcagggcatacctgcacacgaccctca |
3132248 |
T |
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| Q |
118 |
tcagagctgtaaatcttaaggtcatggcggtatgtactatggaggcgaagaagccccgtaccttctcctgcaatattaaatcacacaggttggtctttgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3132247 |
tcagagctgtaaatcttaaggtcatggcggtatgtactatggaggcgaagaagccccgtaccttctcctgcaatattaaatcacacaggttggtctttgt |
3132148 |
T |
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| Q |
218 |
tagacatagtgtggccactgtcaagtagatgttcatgaaataagaatgcaatatcacgtgtgtaactgtaacatatattacatggactataacacaatta |
317 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3132147 |
tagatatagtgtggccactgtcaagtagatgttcatgaaataagaatgcaatatcacgtgtgtaactgtaacatatattacatggactataacacaatta |
3132048 |
T |
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| Q |
318 |
ccgataccatcac-nnnnnnnncgttgcgacattattgtattggcatcaagtatgtattcacatatcgcacaacacaagcttgcttggatattatacaac |
416 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3132047 |
ccgataccatcactttttttttcgttgcgacattattgtattggcatcaagtatgtattcacatatcgcacaacacaagcttgcttggatattatacaac |
3131948 |
T |
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| Q |
417 |
agtatgattatgagagacttcgttgaatacacaggt |
452 |
Q |
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| T |
3131947 |
agtgtgattatgagagacttcgttgaatacacaggt |
3131912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 97 - 191
Target Start/End: Complemental strand, 1926082 - 1925988
Alignment:
| Q |
97 |
catacctgcacacgaccctcatcagagctgtaaatcttaaggtcatggcggtatgtactatggaggcgaagaagccccgtaccttctcctgcaat |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||| || || ||||||||||||||||| |
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| T |
1926082 |
catacctgcacacgaccctcatcagagctgtaaatcttaagatcatgacgatatgtactatggaggcgaagcaggcctgtaccttctcctgcaat |
1925988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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