View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13103_low_1 (Length: 1020)
Name: NF13103_low_1
Description: NF13103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13103_low_1 |
 | |
|
| [»] scaffold0286 (2 HSPs) |
| | |
|
| [»] scaffold0038 (2 HSPs) |
| | |
|
| [»] scaffold0349 (1 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0286 (Bit Score: 619; Significance: 0; HSPs: 2)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 362 - 1004
Target Start/End: Complemental strand, 13044 - 12403
Alignment:
| Q |
362 |
gatgcgggcggaattgtgatagcgaactattgagtcttcatctaattttctcattcatacggattggtgaatcgaatatcctccatactacttttcagct |
461 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13044 |
gatgcgggtggaattgtgatagagaactattgagtcttcatctaattttctcattcatacggattggtgaatcgaatatcctccatactacttttcagct |
12945 |
T |
|
| Q |
462 |
tgaatacgtgaattccactttctataaccaatgcttcctctatgcaaccctcacacttaaacgtaatctctgcatggatccattcagctattaaaagtgc |
561 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12944 |
tgaatacgtgaattccactttctataaccaatgcttcctctatgcaaccctcacacttaaacgtaatctctgcatggatccattcagctattaaaagtgc |
12845 |
T |
|
| Q |
562 |
ttcgcctagtacagattcgagtttcatctcttgcagtcgtagatcatatagatatgtatgatctggttgtaccacgagattgagatcgatactgtcgatg |
661 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
12844 |
ttcgcctagtacagattcgagtttcatctcttgcagtcgtagatcatatagatatgtatgatctggttgtatcacgagattgagattgatactgtcgatg |
12745 |
T |
|
| Q |
662 |
tcaaactcaatatcatatttatagatattggttctcagataggctgttaatgaaggaaaatcactgttgagatgcttgttatccattgatttactagcaa |
761 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12744 |
tcaaactcaatatcatatttatagatattggttctcagataggctgttaatgaaggaaaatcactgttgagatgcttgttatccattgatttactagcaa |
12645 |
T |
|
| Q |
762 |
cgaagagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatcctagcacttcctgc |
861 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12644 |
cgaagagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatcctagcacttcctgc |
12545 |
T |
|
| Q |
862 |
caaactaaactcggtgcctccatcttcatgcacatcctgttatttgtaaataactcacaagtttagcaagtaaaatcattatgaaatatcaaatatgaag |
961 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12544 |
caaactaaactcggtgcctccatcttcatgcacatcctgttatttgtaaataactcacaagtttagcaagtaaaatcattatgaaatatcaaatatgaag |
12445 |
T |
|
| Q |
962 |
tcagatagttataatacaaaacctgagtaagtagcatgcttct |
1004 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12444 |
tcagatagttat-atacaaaacctgagtaagtagcatgcttct |
12403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 13391 - 13132
Alignment:
| Q |
16 |
aatatataggtggaagaattctcggccagattatacttaccacacaatcgaactttgaattacaagagcctcttccctgaaaatgggaggggttaacacc |
115 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| | | ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13391 |
aatatataggtggaagaattcttggccagattatacttaccacatgaccaaacattgaattacaagagcctcttccctgaaaatgggaggggttaacacc |
13292 |
T |
|
| Q |
116 |
caacaaatatccatgcattatcagatgcaggttgaattgttttttctaaaggtaaatagatataaacaaacctgaacgggaaaaaacactctctggaata |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
13291 |
caacaaatatccatgcattatcagatgcaggttgaattgttttttctaaaggtaaatagatatatacaaacctgaacgggaaaaaacactctccggaata |
13192 |
T |
|
| Q |
216 |
gaacagaatacaaagggaaaagctacatacaagtctgtgccctacaggaactcaggggac |
275 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13191 |
gaacagaatacaaagagaaaagctacatacaagtctgtgccctacaggaactcgggggac |
13132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 619; Significance: 0; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 362 - 1004
Target Start/End: Original strand, 2170217 - 2170858
Alignment:
| Q |
362 |
gatgcgggcggaattgtgatagcgaactattgagtcttcatctaattttctcattcatacggattggtgaatcgaatatcctccatactacttttcagct |
461 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2170217 |
gatgcgggtggaattgtgatagagaactattgagtcttcatctaattttctcattcatacggattggtgaatcgaatatcctccatactacttttcagct |
2170316 |
T |
|
| Q |
462 |
tgaatacgtgaattccactttctataaccaatgcttcctctatgcaaccctcacacttaaacgtaatctctgcatggatccattcagctattaaaagtgc |
561 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2170317 |
tgaatacgtgaattccactttctataaccaatgcttcctctatgcaaccctcacacttaaacgtaatctctgcatggatccattcagctattaaaagtgc |
2170416 |
T |
|
| Q |
562 |
ttcgcctagtacagattcgagtttcatctcttgcagtcgtagatcatatagatatgtatgatctggttgtaccacgagattgagatcgatactgtcgatg |
661 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
2170417 |
ttcgcctagtacagattcgagtttcatctcttgcagtcgtagatcatatagatatgtatgatctggttgtatcacgagattgagattgatactgtcgatg |
2170516 |
T |
|
| Q |
662 |
tcaaactcaatatcatatttatagatattggttctcagataggctgttaatgaaggaaaatcactgttgagatgcttgttatccattgatttactagcaa |
761 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2170517 |
tcaaactcaatatcatatttatagatattggttctcagataggctgttaatgaaggaaaatcactgttgagatgcttgttatccattgatttactagcaa |
2170616 |
T |
|
| Q |
762 |
cgaagagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatcctagcacttcctgc |
861 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2170617 |
cgaagagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatcctagcacttcctgc |
2170716 |
T |
|
| Q |
862 |
caaactaaactcggtgcctccatcttcatgcacatcctgttatttgtaaataactcacaagtttagcaagtaaaatcattatgaaatatcaaatatgaag |
961 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2170717 |
caaactaaactcggtgcctccatcttcatgcacatcctgttatttgtaaataactcacaagtttagcaagtaaaatcattatgaaatatcaaatatgaag |
2170816 |
T |
|
| Q |
962 |
tcagatagttataatacaaaacctgagtaagtagcatgcttct |
1004 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2170817 |
tcagatagttat-atacaaaacctgagtaagtagcatgcttct |
2170858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 408 - 1004
Target Start/End: Complemental strand, 2188357 - 2187760
Alignment:
| Q |
408 |
tttctcattcatacggattggtgaatcgaatatcctccatactacttttcagcttgaatacgtgaattccactttctataaccaatgcttcctctatgca |
507 |
Q |
| |
|
||||||| | || ||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||| |||||||| ||| |
|
|
| T |
2188357 |
tttctcaattatgcggattggtaaatcgaatatcctccatactagttttcagcttgaatacgtgaactccactttctataaacaattcttcctctctgcc |
2188258 |
T |
|
| Q |
508 |
accctcacacttaaacgtaatctctgcatggatccattcagctattaaaagtgcttcgcctagtacagattcgagtttcatctcttgcagtcgtagatca |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| || || | || |||||||||||| |||| ||||| |||| |||||| |
|
|
| T |
2188257 |
gccctcacacttaaacgtaatctctgcatggatccattcatctattaaatctgttttctccaggtcagattcgagttccatcacttgctgtcgcagatca |
2188158 |
T |
|
| Q |
608 |
tatagatatgtatgatctggttgtaccacgagattgagatcgatactgtcgatgtcaaactcaatatcatatttatagatattggttctcagataggctg |
707 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||| ||| ||||| |||||||||| ||||| |
|
|
| T |
2188157 |
tatagatatgtatgatctggttgtatcacgagattgagatcgacactgttgatgtcaaactcaataccatcggtatag------gttctcagatgggctg |
2188064 |
T |
|
| Q |
708 |
ttaatgaaggaaaatcactgttgagatgcttgttatccattgatttactagcaacgaagagagctatggaagggaacctgtcacgaaaccagaaagaaat |
807 |
Q |
| |
|
|||||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
2188063 |
ttaatgaaagaaaatcactgttgggatgcctgttatccgttgatagactagcaacgaagagagctatggaagggaacctgccacgaaaccaaaaagaaat |
2187964 |
T |
|
| Q |
808 |
tgatggtcccttgctttgttgatcaaaccactctggaatcctagcacttcctgccaaactaaactcggtgcctccatcttcatgcacatcctgttatttg |
907 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
2187963 |
tgatggtccctcgctttggtgatcaaaccactctggaaccctagcacttcctgccaaactaaactcggtgcctccatcttcatgcaaatgctgttatttg |
2187864 |
T |
|
| Q |
908 |
taaataactcacaagtttagcaagtaaaatcattatgaaatatcaaatatgaagtcagatagttat-------aatacaaaacctgagtaagtagcatgc |
1000 |
Q |
| |
|
|||| |||| |||||||||||||| |||||||||||||||||| ||| ||||||||| |||| ||| |||||||||||||| |||||||||||| |
|
|
| T |
2187863 |
taaagaactaacaagtttagcaagaaaaatcattatgaaatattaaaaatgaagtcaaatagatataaaacaaaatacaaaacctgactaagtagcatgc |
2187764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 2169871 - 2170130
Alignment:
| Q |
16 |
aatatataggtggaagaattctcggccagattatacttaccacacaatcgaactttgaattacaagagcctcttccctgaaaatgggaggggttaacacc |
115 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| | | ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2169871 |
aatatataggtggaagaattcttggccagattatacttaccacatgaccaaacattgaattacaagagcctcttccctgaaaatgggaggggttaacacc |
2169970 |
T |
|
| Q |
116 |
caacaaatatccatgcattatcagatgcaggttgaattgttttttctaaaggtaaatagatataaacaaacctgaacgggaaaaaacactctctggaata |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
2169971 |
caacaaatatccatgcattatcagatgcaggttgaattgttttttctaaaggtaaatagatatatacaaacctgaacgggaaaaaacactctccggaata |
2170070 |
T |
|
| Q |
216 |
gaacagaatacaaagggaaaagctacatacaagtctgtgccctacaggaactcaggggac |
275 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2170071 |
gaacagaatacaaagagaaaagctacatacaagtctgtgccctacaggaactcgggggac |
2170130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 735 - 903
Target Start/End: Complemental strand, 28142797 - 28142629
Alignment:
| Q |
735 |
gcttgttatccattgatttactagcaacgaagagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaa |
834 |
Q |
| |
|
||||||||| || |||||| |||||| ||||| ||| |||||||||||| | |||||||||||||||| ||||||||||||||||||||| || ||||| |
|
|
| T |
28142797 |
gcttgttatttatggatttagtagcaaagaagatagccatggaagggaacttttcacgaaaccagaaagtaattgatggtcccttgctttggtgctcaaa |
28142698 |
T |
|
| Q |
835 |
ccactctggaatcctagcacttcctgccaaactaaactcggtgcctccatcttcatgcacatcctgtta |
903 |
Q |
| |
|
||||||||||||||| | |||||||| ||| ||| || |||| |||| | ||||||| |||||||| |
|
|
| T |
28142697 |
ccactctggaatcctttctgttcctgcccaacgaaaatctgtgcttccagcctcatgcagttcctgtta |
28142629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 765 - 903
Target Start/End: Complemental strand, 28246497 - 28246359
Alignment:
| Q |
765 |
agagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatcctagcacttcctgccaa |
864 |
Q |
| |
|
||||||| |||||||||| | ||| ||||||||| |||||||||| ||||| ||||||| ||||||||||| ||||||||||| ||| ||||| || |
|
|
| T |
28246497 |
agagagccatggaagggagcttgttacgaaaccaaaaagaaattgtatgtcccatgctttggtgatcaaaccaatctggaatccttgcaaatcctgaaaa |
28246398 |
T |
|
| Q |
865 |
actaaactcggtgcctccatcttcatgcacatcctgtta |
903 |
Q |
| |
|
|| ||| | ||| |||||| | ||||||| |||||||| |
|
|
| T |
28246397 |
acaaaatttggttcctccagcctcatgcagttcctgtta |
28246359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 765 - 903
Target Start/End: Complemental strand, 28525367 - 28525229
Alignment:
| Q |
765 |
agagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatcctagcacttcctgccaa |
864 |
Q |
| |
|
||||||| |||||||||| ||| ||||||||| |||||||||| ||||| || |||| ||||||||||||||||||||||| ||| ||||| ||| |
|
|
| T |
28525367 |
agagagcaatggaagggaggttgttacgaaaccaaaaagaaattgtatgtcccatgttttggtgatcaaaccactctggaatccttgcaaatcctggcaa |
28525268 |
T |
|
| Q |
865 |
actaaactcggtgcctccatcttcatgcacatcctgtta |
903 |
Q |
| |
|
|| |||| ||| |||||| | ||||||| |||||||| |
|
|
| T |
28525267 |
acaaaacctggttcctccagcctcatgcagttcctgtta |
28525229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 765 - 849
Target Start/End: Complemental strand, 28239519 - 28239435
Alignment:
| Q |
765 |
agagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatcct |
849 |
Q |
| |
|
||||||| |||||||||| | ||| ||||||||| |||||||||| ||||| || |||| ||||||||||||||||||||||| |
|
|
| T |
28239519 |
agagagccatggaagggagcttgttacgaaaccaaaaagaaattgtatgtcccatgttttgatgatcaaaccactctggaatcct |
28239435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 790 - 848
Target Start/End: Complemental strand, 26805614 - 26805556
Alignment:
| Q |
790 |
acgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatcc |
848 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| || |||||||| ||||| |||| |
|
|
| T |
26805614 |
acgaaaccagaaagaaattgtgggtcccttgctttggtgctcaaaccaatctggtatcc |
26805556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 745 - 845
Target Start/End: Complemental strand, 29829203 - 29829103
Alignment:
| Q |
745 |
cattgatttactagcaacgaagagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctgga |
844 |
Q |
| |
|
||||||||||| | |||||||||| | ||||| |||| | ||| ||||||||| ||||| |||||||| ||| | |||| || ||||||||||||||| |
|
|
| T |
29829203 |
cattgatttacaaacaacgaagagggttatggtggggagcttgttacgaaaccaaaaagatattgatggccccctattttggtgctcaaaccactctgga |
29829104 |
T |
|
| Q |
845 |
a |
845 |
Q |
| |
|
| |
|
|
| T |
29829103 |
a |
29829103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 790 - 848
Target Start/End: Original strand, 27715568 - 27715626
Alignment:
| Q |
790 |
acgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatcc |
848 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||| || |||||||| ||||| |||| |
|
|
| T |
27715568 |
acgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtatcc |
27715626 |
T |
|
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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 763 - 849
Target Start/End: Complemental strand, 28152364 - 28152278
Alignment:
| Q |
763 |
gaagagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatcct |
849 |
Q |
| |
|
||||||||| |||||||||| | ||| | |||||||||||||||||| | ||| | |||| || || | |||| ||||||||||||| |
|
|
| T |
28152364 |
gaagagagcaatggaagggagcttgttatgaaaccagaaagaaattgtttgtctcgtgctctggtgcttaaacgactctggaatcct |
28152278 |
T |
|
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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 765 - 810
Target Start/End: Original strand, 29671548 - 29671593
Alignment:
| Q |
765 |
agagagctatggaagggaacctgtcacgaaaccagaaagaaattga |
810 |
Q |
| |
|
|||||||||||| ||| ||| ||| ||||||||||||||||||||| |
|
|
| T |
29671548 |
agagagctatggcaggaaacttgttacgaaaccagaaagaaattga |
29671593 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 765 - 903
Target Start/End: Complemental strand, 46659 - 46521
Alignment:
| Q |
765 |
agagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatcctagcacttcctgccaa |
864 |
Q |
| |
|
||||||| |||||||||| | ||| ||||||||| |||||||||| ||||| ||||||| ||||||||||| ||||||||||| ||| ||||| || |
|
|
| T |
46659 |
agagagccatggaagggagcttgttacgaaaccaaaaagaaattgtatgtcccatgctttggtgatcaaaccaatctggaatccttgcaaatcctgaaaa |
46560 |
T |
|
| Q |
865 |
actaaactcggtgcctccatcttcatgcacatcctgtta |
903 |
Q |
| |
|
|| ||| | ||| |||||| | ||||||| |||||||| |
|
|
| T |
46559 |
acaaaatttggttcctccagcctcatgcagttcctgtta |
46521 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 765 - 849
Target Start/End: Complemental strand, 39681 - 39597
Alignment:
| Q |
765 |
agagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatcct |
849 |
Q |
| |
|
||||||| |||||||||| | ||| ||||||||| |||||||||| ||||| || |||| ||||||||||||||||||||||| |
|
|
| T |
39681 |
agagagccatggaagggagcttgttacgaaaccaaaaagaaattgtatgtcccatgttttgatgatcaaaccactctggaatcct |
39597 |
T |
|
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 437 - 488
Target Start/End: Complemental strand, 16694636 - 16694585
Alignment:
| Q |
437 |
atatcctccatactacttttcagcttgaatacgtgaattccactttctataa |
488 |
Q |
| |
|
||||||||||| ||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
16694636 |
atatcctccatgctacttttctgcttgaataagtgaattccactttctataa |
16694585 |
T |
|
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Target: scaffold0349 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 790 - 848
Target Start/End: Complemental strand, 16377 - 16319
Alignment:
| Q |
790 |
acgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatcc |
848 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||| || |||||||| ||||| |||| |
|
|
| T |
16377 |
acgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtatcc |
16319 |
T |
|
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Target: scaffold0019 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 764 - 849
Target Start/End: Original strand, 55270 - 55355
Alignment:
| Q |
764 |
aagagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatcct |
849 |
Q |
| |
|
|||||||| ||||||||| | ||| ||||||||| |||||||| | ||||| || |||| || |||||||||||||||||||| |
|
|
| T |
55270 |
aagagagccgtggaagggagcttgttacgaaaccaaaaagaaatcgtatgtcccatgttttggtgctcaaaccactctggaatcct |
55355 |
T |
|
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