View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13103_low_12 (Length: 329)
Name: NF13103_low_12
Description: NF13103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13103_low_12 |
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| [»] scaffold0067 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 294
Target Start/End: Complemental strand, 48219128 - 48218850
Alignment:
| Q |
13 |
ttcactgtgattccattctaactgatcataatctgaaaataccaggtggggttcaagaatttctttgaaggaactacctcctagatctgttaaaaatttc |
112 |
Q |
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| T |
48219128 |
ttcactgtgattccattctaactgatcataatatgaaaataccaggtgaggttcaagaatttctttgaaggaactacctcctagatctgttaaaaatttc |
48219029 |
T |
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| Q |
113 |
agatctatagaaatcgttctgctgtttttctttctacaagcactgcacatcacaagtcttttaaatgttggtggttcgttgtgtcgtgaattctgagaat |
212 |
Q |
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| T |
48219028 |
agatctatagaaatctttctgctgtttttctttctacaagcactgca---cacaagtctcttaaatgttggtggtttgttgtgtcgtgaattctgagaat |
48218932 |
T |
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| Q |
213 |
catggttgagacaccnnnnnnnnttcacatctcaccaagtgtttgattttccagtttgattcaagaatccaaaaatttatag |
294 |
Q |
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| T |
48218931 |
catggttgagacaccaaaaaaaattcacatctcaccaagtgtttgattttccagtttgattcaagaatccaaaaatttatag |
48218850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 23401615 - 23401531
Alignment:
| Q |
42 |
aatctgaaaataccaggtggggttcaagaatttctttgaaggaactacctcctagatctgttaaaaatttcagatctatagaaat |
126 |
Q |
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| T |
23401615 |
aatctgaaaatatcaggtgtggttcaagaacttctttgaaggaactgcctcctagatccattgaaatattcagatctatagaaat |
23401531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 289
Target Start/End: Original strand, 7165 - 7204
Alignment:
| Q |
250 |
agtgtttgattttccagtttgattcaagaatccaaaaatt |
289 |
Q |
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| T |
7165 |
agtgtttggttttccagtttgattcacgaatccaaaaatt |
7204 |
T |
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