View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13103_low_17 (Length: 265)
Name: NF13103_low_17
Description: NF13103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13103_low_17 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 14665921 - 14665685
Alignment:
| Q |
18 |
tatacttaggaacttcatgcattgccatatttgttccttttatagaatatattgatgattgtagtaaatcacaacaataaacattgattgaaaggtgaaa |
117 |
Q |
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| T |
14665921 |
tatacttaggagcttcatgcattgctatatttgttccttttatagaatatattgat---tgtagtaaatcactacaataa-cattgattgaaagttgaaa |
14665826 |
T |
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| Q |
118 |
cctaacccccaggttattagctaccgaagctctttctatatagattttgtttgaagtttgaactagtattgttgaagtataagtgagttatcagctagaa |
217 |
Q |
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| T |
14665825 |
cctaacccccagtttattagctactgaagctcttgctataaagattttgtt-------tgaactaatattgttgaagtataagtgagttatcagctagaa |
14665733 |
T |
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| Q |
218 |
tgtattaaatttgaaactagttacaataacttcttgtgcaagtaattt |
265 |
Q |
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| T |
14665732 |
agtattaaatttgaaactagttacaataactttttgtgcaaggaattt |
14665685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 131 - 265
Target Start/End: Original strand, 14687786 - 14687920
Alignment:
| Q |
131 |
ttattagctaccgaagctctttctatatagattttgtttgaagtttgaactagtattgttgaagtataagtgagttatcagctagaatgtattaaatttg |
230 |
Q |
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| T |
14687786 |
ttattagctaccgaagctctttctatatagattttgtttgaagtttgaattagtattgttgaagtataagtgcgttatcagctagaatgtattaaatttg |
14687885 |
T |
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| Q |
231 |
aaactagttacaataacttcttgtgcaagtaattt |
265 |
Q |
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| T |
14687886 |
aaactagttacaataacttcttgtgcaagtaattt |
14687920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 14673066 - 14673121
Alignment:
| Q |
18 |
tatacttaggaacttcatgcattgccatatttgttccttttatagaatatattgat |
73 |
Q |
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| T |
14673066 |
tatacttaggaacttctggcattgccatatttgttccttttatagaatattttgat |
14673121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 14678444 - 14678499
Alignment:
| Q |
18 |
tatacttaggaacttcatgcattgccatatttgttccttttatagaatatattgat |
73 |
Q |
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| T |
14678444 |
tatacttaggaacttctggcattgccatatttgttccttttatagaatattttgat |
14678499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 14687745 - 14687781
Alignment:
| Q |
18 |
tatacttaggaacttcatgcattgccatatttgttcc |
54 |
Q |
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| T |
14687745 |
tatacttaggaacttgatgcattgccatatttgttcc |
14687781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 30735239 - 30735422
Alignment:
| Q |
18 |
tatacttaggaacttcatgcattgccatatttgttccttttatagaatatattgatgattgtagtaaatcacaacaataaacattgattgaaaggtgaaa |
117 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| ||||| |
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| T |
30735239 |
tatacttaggagcttcatgcattgcaatatttgttccttttatagaatatattgat---tgtagtaaatcactacaataa-cattgattgaaagttgaaa |
30735334 |
T |
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| Q |
118 |
cctaacccccaggttattagctaccgaagctctttctatatagattttgtttgaagtttgaactagtattgttgaagtataagtgagttatcagc |
212 |
Q |
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| T |
30735335 |
cctaaccaccagattattagctactgaagctcttgctataaagatttt-------gtttgaactaatattgttgaagtataagtgagttatcagc |
30735422 |
T |
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