View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13103_low_20 (Length: 257)

Name: NF13103_low_20
Description: NF13103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13103_low_20
NF13103_low_20
[»] chr4 (2 HSPs)
chr4 (51-241)||(26901742-26901931)
chr4 (52-241)||(26897281-26897469)
[»] chr5 (2 HSPs)
chr5 (52-241)||(27205694-27205883)
chr5 (51-241)||(27210158-27210348)
[»] chr3 (13 HSPs)
chr3 (51-241)||(24047081-24047271)
chr3 (51-241)||(23674805-23674995)
chr3 (52-241)||(23679310-23679499)
chr3 (52-241)||(24051547-24051736)
chr3 (1-51)||(26235936-26235986)
chr3 (1-51)||(26179508-26179555)
chr3 (1-51)||(26202041-26202088)
chr3 (1-48)||(26205419-26205463)
chr3 (1-51)||(26128154-26128201)
chr3 (1-51)||(26178204-26178251)
chr3 (2-48)||(26233483-26233526)
chr3 (2-48)||(26111137-26111180)
chr3 (1-51)||(26113652-26113699)
[»] chr1 (2 HSPs)
chr1 (51-241)||(26406691-26406881)
chr1 (51-241)||(26411157-26411347)
[»] chr8 (1 HSPs)
chr8 (51-195)||(24859182-24859326)


Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 51 - 241
Target Start/End: Original strand, 26901742 - 26901931
Alignment:
Q  51 ctgttggtggtattctagaagtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatga 150  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26901742 ctgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatga 26901841  T
Q  151 acattgaagaaaaactgattttgttgaattcaccacatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaaa 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26901842 acattgaagaaaaactgattttgttgaattcaccacatactgcttac-ttcaacttagcattacaaagcctttatataggctagaaggaaa 26901931  T

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Target: chr4; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 52 - 241
Target Start/End: Original strand, 26897281 - 26897469
Alignment:
Q  52 tgttggtggtattctagaagtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaa 151  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26897281 tgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaa 26897380  T
Q  152 cattgaagaaaaactgattttgttgaattcaccacatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaaa 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26897381 cattgaagaaaaactgattttgttgaattcaccacatactgcttac-ttcaacttagcattacaaagcctttatataggctagaaggaaa 26897469  T

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Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 52 - 241
Target Start/End: Original strand, 27205694 - 27205883
Alignment:
Q  52 tgttggtggtattctagaagtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaa 151  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27205694 tgttgatggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaa 27205793  T
Q  152 cattgaagaaaaactgattttgttgaattcaccacatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaaa 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27205794 cattgaagaaaaactgattttgttgaattcaccacatactgcttacgttcaacttagcattacaaagcctttatataggctagaaggaaa 27205883  T

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Target: chr5; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 51 - 241
Target Start/End: Original strand, 27210158 - 27210348
Alignment:
Q  51 ctgttggtggtattctagaagtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatga 150  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27210158 ctgttggtggtattctagaggtggtatgttataaattatactattgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatga 27210257  T
Q  151 acattgaagaaaaactgattttgttgaattcaccacatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaaa 241  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  27210258 acattgaagaaaaactgattttgttgaattcaccacatactacttacgttcaacttagcattacaaagcctttatatagactagaaggaaa 27210348  T

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Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 51 - 241
Target Start/End: Complemental strand, 24047271 - 24047081
Alignment:
Q  51 ctgttggtggtattctagaagtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatga 150  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  24047271 ctgttggtggtattctagaggtggtatgttataaattatactgttgcaggatcttgagcggaaacgtgactttttatactatacttccactggtggatga 24047172  T
Q  151 acattgaagaaaaactgattttgttgaattcaccacatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaaa 241  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24047171 acattgaataaaaactgattttgttgaattcaccacatactgcttactttcaacttagcattacaaagcctttatataggctagaaggaaa 24047081  T

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Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 51 - 241
Target Start/End: Complemental strand, 23674995 - 23674805
Alignment:
Q  51 ctgttggtggtattctagaagtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatga 150  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||    
T  23674995 ctgttggtggtattctagaggtggtatgttataaattatactgttgcaggatcttgagcgaaaacgtgactttttatactatacttccactggtggatga 23674896  T
Q  151 acattgaagaaaaactgattttgttgaattcaccacatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaaa 241  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23674895 acattgaataaaaactgattttgttgaattcaccacatactgcttactttcaacttagcattacaaagcctttatataggctagaaggaaa 23674805  T

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Target: chr3; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 52 - 241
Target Start/End: Complemental strand, 23679499 - 23679310
Alignment:
Q  52 tgttggtggtattctagaagtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaa 151  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||    
T  23679499 tgttggtggtattctagaggtggtatgttataaattatactgttgcaggatcttgagcgaaaacgtgactttttatactatacttccactggtggatgaa 23679400  T
Q  152 cattgaagaaaaactgattttgttgaattcaccacatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaaa 241  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23679399 cattgaataaaaactgattttgttgaattcaccacatactgcttactttcaacttagcattacaaagcctttatataggctagaaggaaa 23679310  T

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Target: chr3; HSP #4
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 52 - 241
Target Start/End: Complemental strand, 24051736 - 24051547
Alignment:
Q  52 tgttggtggtattctagaagtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaa 151  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||    
T  24051736 tgttggtggtattctagaggtggtatgttataaattatactgttgcaggatcttgagcgaaaacgtgactttttatactatacttccactggtggatgaa 24051637  T
Q  152 cattgaagaaaaactgattttgttgaattcaccacatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaaa 241  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24051636 cattgaataaaaactgattttgttgaattcaccacatactgcttactttcaacttagcattacaaagcctttatataggctagaaggaaa 24051547  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 26235936 - 26235986
Alignment:
Q  1 ctgtaatggtggacacagttgctgctgctgctgttatttctgatgtagaac 51  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26235936 ctgtaatggtggacacagttgctgcttctgctgttatttctgatgtagaac 26235986  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 26179508 - 26179555
Alignment:
Q  1 ctgtaatggtggacacagttgctgctgctgctgttatttctgatgtagaac 51  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||||    
T  26179508 ctgtaatggtggacacagt---tgctgctgctgttatttctgatgtagaac 26179555  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 26202041 - 26202088
Alignment:
Q  1 ctgtaatggtggacacagttgctgctgctgctgttatttctgatgtagaac 51  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||||    
T  26202041 ctgtaatggtggacacagt---tgctgctgctgttatttctgatgtagaac 26202088  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 26205419 - 26205463
Alignment:
Q  1 ctgtaatggtggacacagttgctgctgctgctgttatttctgatgtag 48  Q
    |||||||||||||||||||   ||||||||||||||||||||||||||    
T  26205419 ctgtaatggtggacacagt---tgctgctgctgttatttctgatgtag 26205463  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 26128154 - 26128201
Alignment:
Q  1 ctgtaatggtggacacagttgctgctgctgctgttatttctgatgtagaac 51  Q
    |||||||||||||||||||   ||||||| |||||||||||||||||||||    
T  26128154 ctgtaatggtggacacagt---tgctgctcctgttatttctgatgtagaac 26128201  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 26178204 - 26178251
Alignment:
Q  1 ctgtaatggtggacacagttgctgctgctgctgttatttctgatgtagaac 51  Q
    |||||||||||||||||||   ||||||| |||||||||||||||||||||    
T  26178204 ctgtaatggtggacacagt---tgctgctcctgttatttctgatgtagaac 26178251  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 26233483 - 26233526
Alignment:
Q  2 tgtaatggtggacacagttgctgctgctgctgttatttctgatgtag 48  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||    
T  26233483 tgtaatggtggacacagt---tgctgctgctgttatttctgatgtag 26233526  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 26111137 - 26111180
Alignment:
Q  2 tgtaatggtggacacagttgctgctgctgctgttatttctgatgtag 48  Q
    ||||||||||| ||||||||||   ||||||||||||||||||||||    
T  26111137 tgtaatggtggccacagttgct---gctgctgttatttctgatgtag 26111180  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 26113652 - 26113699
Alignment:
Q  1 ctgtaatggtggacacagttgctgctgctgctgttatttctgatgtagaac 51  Q
    |||||||||||| ||||||||||||| |||   ||||||||||||||||||    
T  26113652 ctgtaatggtgggcacagttgctgcttctg---ttatttctgatgtagaac 26113699  T

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Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 51 - 241
Target Start/End: Complemental strand, 26406881 - 26406691
Alignment:
Q  51 ctgttggtggtattctagaagtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatga 150  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  26406881 ctgttggtggtattctagaggtggtatgttataaattatactgttgcaggatcttgagcggaaacgtgactttttatactatacttccactggtggatga 26406782  T
Q  151 acattgaagaaaaactgattttgttgaattcaccacatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaaa 241  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26406781 acattgaataaaaactgattttgttgaattcaccacatactgcttactttcaacttagcattacaaagcctttatataggctagaaggaaa 26406691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 51 - 241
Target Start/End: Complemental strand, 26411347 - 26411157
Alignment:
Q  51 ctgttggtggtattctagaagtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatga 150  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  26411347 ctgttggtggtattctagaggtggtatgttataaattatactgttgcaggatcttgagcggaaacgtgactttttatactatacttccactggtggatga 26411248  T
Q  151 acattgaagaaaaactgattttgttgaattcaccacatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaaa 241  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26411247 acattgaataaaaactgattttgttgaattcaccacatactgcttactttcaacttagcattacaaagcctttatataggctagaaggaaa 26411157  T

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Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 51 - 195
Target Start/End: Complemental strand, 24859326 - 24859182
Alignment:
Q  51 ctgttggtggtattctagaagtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatga 150  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24859326 ctgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatga 24859227  T
Q  151 acattgaagaaaaactgattttgttgaattcaccacatactgctt 195  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  24859226 acattgaagaaaaactgattttgttgaattcaccgcatactgctt 24859182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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