View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13103_low_21 (Length: 257)
Name: NF13103_low_21
Description: NF13103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13103_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 161447 - 161549
Alignment:
| Q |
27 |
aaacccaaaaagacaacatgaatataaaaacaacaaattagcatgaatacaatctcgaatggcatgaagcaaagttccaacctccacacaacacattaga |
126 |
Q |
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| T |
161447 |
aaacccaaaaagacaacatcaatataaaaacaacaaattagcatgaatacagtctcgaatggcatgaagcaaagttctaacctccacacaacacattaga |
161546 |
T |
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| Q |
127 |
tag |
129 |
Q |
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||| |
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| T |
161547 |
tag |
161549 |
T |
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Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 125 - 233
Target Start/End: Original strand, 161574 - 161679
Alignment:
| Q |
125 |
gatagtttgtctataaaacccataccatcagtagagtaaatcaatgctagtttctcatgtacttcagaagaagaaagaaggagtaataaatcattacata |
224 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
161574 |
gatagtttgtctataaaacccataccatcaatagagtaaatcaatgctagtttctcatgtacttc---agaagaaagaaggagtaataaatcattacata |
161670 |
T |
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| Q |
225 |
tgttgagag |
233 |
Q |
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| T |
161671 |
tgttgagag |
161679 |
T |
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