View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13103_low_4 (Length: 501)
Name: NF13103_low_4
Description: NF13103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13103_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 3e-77; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 71 - 225
Target Start/End: Original strand, 10405675 - 10405829
Alignment:
| Q |
71 |
tatttgattgaatatattcatgacaatcatcgtccatttaatatacatttatgataataggcataactttgaccttgaataatgaaggagtgctacactt |
170 |
Q |
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| T |
10405675 |
tatttgattgaatatattcatgacaatcatcgtccatttaatatacatttatgataataggcataactttgaccttgaataatgaaggagtgctacactt |
10405774 |
T |
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| Q |
171 |
cataccgttttgaaagaattggcctaatttggctagccactgcatgatgtgggtg |
225 |
Q |
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| T |
10405775 |
cataccgttttgaaagaattggcctattttggctagccacttcatgatgtgggtg |
10405829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 390 - 486
Target Start/End: Original strand, 10406780 - 10406876
Alignment:
| Q |
390 |
gtgactataataaaatttcaagaacaaaattattacgagttctgaaaactacaatatattcaaaaaacaccaaaattgttttgcattaatagttgat |
486 |
Q |
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| T |
10406780 |
gtgagtataataaaatttcaagaacaaaattattacgagttctgaagacaaaaatatattcaaaaaacaccaaaattgttttgcattaatagttgat |
10406876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 71 - 179
Target Start/End: Original strand, 10395064 - 10395172
Alignment:
| Q |
71 |
tatttgattgaatatattcatgacaatcatcgtccatttaatatacatttatgataataggcataactttgaccttgaataatgaaggagtgctacactt |
170 |
Q |
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| T |
10395064 |
tatttgattgagtatattcatgacaatcaacgtccatatgaaatgcatttatgataataggcataacattgaccctgaataatgaaggagtgctacattt |
10395163 |
T |
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| Q |
171 |
cataccgtt |
179 |
Q |
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| T |
10395164 |
cataccgtt |
10395172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 253 - 367
Target Start/End: Original strand, 10406586 - 10406708
Alignment:
| Q |
253 |
gtctccatttaactctttagtgttctaactctttattttgtcttcaaagtggttgacac----tatgttatgatgg----gagtatcccttagcttttgc |
344 |
Q |
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| T |
10406586 |
gtcttcatttaactctttagtgttctaactctttgttttgtcttcaaagtggttgacactatatatgttatgatgggactgagtataccttagcttttac |
10406685 |
T |
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| Q |
345 |
actctttaattcaattgcttatt |
367 |
Q |
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| T |
10406686 |
actctttaactcaattgcttatt |
10406708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 486
Target Start/End: Original strand, 10396564 - 10396656
Alignment:
| Q |
390 |
gtgactataataaaatttcaagaacaaaattattacg-agttctgaaaactacaatatattcaaaaaacaccaaaattgttttgcattaatagttgat |
486 |
Q |
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| T |
10396564 |
gtgactataatcaaatttaaagaacaaaattattacgaaattctaaagact---atacatt--taaaacacaaaaattgttttgcattaatagttgat |
10396656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 83 - 158
Target Start/End: Original strand, 26419662 - 26419737
Alignment:
| Q |
83 |
tatattcatgacaatcatcgtccatttaatatacatttatgataataggcataactttgaccttgaataatgaagg |
158 |
Q |
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| T |
26419662 |
tatatttatgacaatcaacgtttatttaatatgcatttatgataataggcatagaattgaccttgaataatgaagg |
26419737 |
T |
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