View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13103_low_5 (Length: 487)

Name: NF13103_low_5
Description: NF13103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13103_low_5
NF13103_low_5
[»] chr7 (9 HSPs)
chr7 (302-473)||(29735788-29735951)
chr7 (105-160)||(29734900-29734955)
chr7 (297-396)||(29732422-29732524)
chr7 (181-232)||(29734974-29735022)
chr7 (357-396)||(6931923-6931962)
chr7 (181-232)||(29732590-29732641)
chr7 (105-160)||(29732660-29732716)
chr7 (419-474)||(29732353-29732408)
chr7 (187-220)||(6931982-6932015)
[»] chr6 (3 HSPs)
chr6 (357-396)||(14544473-14544512)
chr6 (53-86)||(11528737-11528770)
chr6 (187-220)||(14544532-14544565)
[»] chr4 (3 HSPs)
chr4 (357-396)||(507987-508026)
chr4 (49-80)||(43539816-43539847)
chr4 (187-220)||(508046-508079)
[»] chr3 (4 HSPs)
chr3 (357-396)||(9293023-9293062)
chr3 (187-220)||(9292970-9293003)
chr3 (52-84)||(7757080-7757112)
chr3 (49-85)||(27185473-27185509)
[»] chr5 (1 HSPs)
chr5 (53-84)||(1082252-1082283)
[»] chr2 (2 HSPs)
chr2 (42-87)||(13395004-13395049)
chr2 (54-82)||(7717646-7717674)


Alignment Details
Target: chr7 (Bit Score: 74; Significance: 9e-34; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 302 - 473
Target Start/End: Original strand, 29735788 - 29735951
Alignment:
Q  302 tggtaagtaatactactctgaaacatcctaatataagatttgatctcattgacgttaaatgaaaatcgtgtagcgtttcaggcaaatccattatagaaag 401  Q
    ||||||||||||||||||| ||||||| |||||||||| ||||||||||  || ||||||||||||| |||| ||||||||  |||||||||||||| |     
T  29735788 tggtaagtaatactactctaaaacatcataatataagacttgatctcataaacattaaatgaaaatcatgtaacgtttcagaaaaatccattatagata- 29735886  T
Q  402 nnnnnnnnnnnnnngatgacagaaattgaaatttcatgtccttgtcgacatggctaagaaaaaacttgtata 473  Q
                   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29735887 -------aaaaaaaaatgacagaaattgaaatttcatgtccttgtcgacatggctaagaaaaaacttgtata 29735951  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 29734900 - 29734955
Alignment:
Q  105 aatttatatgctacattttattatttagccacaattaaacaagaatcagacccaac 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29734900 aatttatatgctacattttattatttagccacaattaaacaagaatcagacccaac 29734955  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 396
Target Start/End: Complemental strand, 29732524 - 29732422
Alignment:
Q  297 tggattggtaagtaatact---actctgaaacatcctaatataagatttgatctcattgacgttaaatgaaaatcgtgtagcgtttcaggcaaatccatt 393  Q
    |||||||||||||||||||   ||||| |||| |||||||||||||  ||||||||   || ||||||||||||||||||| ||||| | ||||||||||    
T  29732524 tggattggtaagtaatactgctactcttaaacttcctaatataagacctgatctcagaaacattaaatgaaaatcgtgtagtgtttcggacaaatccatt 29732425  T
Q  394 ata 396  Q
    |||    
T  29732424 ata 29732422  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 29734974 - 29735022
Alignment:
Q  181 catattgtaagtaatactattcctagacttcctaatataagacctgaactca 232  Q
    |||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  29734974 catattgtaagta---ctattcctagacttcctaatataagacctgaactca 29735022  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 357 - 396
Target Start/End: Complemental strand, 6931962 - 6931923
Alignment:
Q  357 taaatgaaaatcgtgtagcgtttcaggcaaatccattata 396  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  6931962 taaaagaaaatcgtgtagcgtttcaggcaaatccattata 6931923  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 29732641 - 29732590
Alignment:
Q  181 catattgtaagtaatactattcctagacttcctaatataagacctgaactca 232  Q
    |||||||||||||||| ||||||||  |||||||||||||||||||| ||||    
T  29732641 catattgtaagtaatattattcctaagcttcctaatataagacctgatctca 29732590  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 29732716 - 29732660
Alignment:
Q  105 aatttatatgctacattttatt-atttagccacaattaaacaagaatcagacccaac 160  Q
    ||||||| |||||| ||||||| ||||||||||||||||||||||| ||| ||||||    
T  29732716 aatttatttgctacgttttatttatttagccacaattaaacaagaaccagtcccaac 29732660  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 474
Target Start/End: Complemental strand, 29732408 - 29732353
Alignment:
Q  419 gacagaaattgaaatttcatgtccttgtcgacatggctaagaaaaaacttgtatat 474  Q
    |||| ||||||||||||||||||||| |||| ||| ||||||||||| || |||||    
T  29732408 gacataaattgaaatttcatgtccttatcgatatgtctaagaaaaaaattatatat 29732353  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 6932015 - 6931982
Alignment:
Q  187 gtaagtaatactattcctagacttcctaatataa 220  Q
    ||||||||||||| ||||||||||||||||||||    
T  6932015 gtaagtaatactactcctagacttcctaatataa 6931982  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 357 - 396
Target Start/End: Complemental strand, 14544512 - 14544473
Alignment:
Q  357 taaatgaaaatcgtgtagcgtttcaggcaaatccattata 396  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  14544512 taaaagaaaatcgtgtagcgtttcaggcaaatccattata 14544473  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 11528770 - 11528737
Alignment:
Q  53 attgtccctaccaactgaactaagctcatgagaa 86  Q
    |||||||||||||||||||||||| |||||||||    
T  11528770 attgtccctaccaactgaactaagttcatgagaa 11528737  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 14544565 - 14544532
Alignment:
Q  187 gtaagtaatactattcctagacttcctaatataa 220  Q
    ||||||||||||| ||||||||||||||||||||    
T  14544565 gtaagtaatactactcctagacttcctaatataa 14544532  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 357 - 396
Target Start/End: Complemental strand, 508026 - 507987
Alignment:
Q  357 taaatgaaaatcgtgtagcgtttcaggcaaatccattata 396  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  508026 taaaagaaaatcgtgtagcgtttcaggcaaatccattata 507987  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 80
Target Start/End: Complemental strand, 43539847 - 43539816
Alignment:
Q  49 atgtattgtccctaccaactgaactaagctca 80  Q
    ||||||||||||||||||||||||||||||||    
T  43539847 atgtattgtccctaccaactgaactaagctca 43539816  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 508079 - 508046
Alignment:
Q  187 gtaagtaatactattcctagacttcctaatataa 220  Q
    ||||||||||||| ||||||||||||||||||||    
T  508079 gtaagtaatactactcctagacttcctaatataa 508046  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 357 - 396
Target Start/End: Original strand, 9293023 - 9293062
Alignment:
Q  357 taaatgaaaatcgtgtagcgtttcaggcaaatccattata 396  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  9293023 taaaagaaaatcgtgtagcgtttcaggcaaatccattata 9293062  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 9292970 - 9293003
Alignment:
Q  187 gtaagtaatactattcctagacttcctaatataa 220  Q
    ||||||||||||| ||||||||||||||||||||    
T  9292970 gtaagtaatactactcctagacttcctaatataa 9293003  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 84
Target Start/End: Complemental strand, 7757112 - 7757080
Alignment:
Q  52 tattgtccctaccaactgaactaagctcatgag 84  Q
    |||||||| ||||||||||||||||||||||||    
T  7757112 tattgtccataccaactgaactaagctcatgag 7757080  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 27185509 - 27185473
Alignment:
Q  49 atgtattgtccctaccaactgaactaagctcatgaga 85  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  27185509 atgtattgtccctaccaactgagctaagctcacgaga 27185473  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 84
Target Start/End: Original strand, 1082252 - 1082283
Alignment:
Q  53 attgtccctaccaactgaactaagctcatgag 84  Q
    ||||||||||||||||||||||||||||||||    
T  1082252 attgtccctaccaactgaactaagctcatgag 1082283  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 13395004 - 13395049
Alignment:
Q  42 atataccatgtattgtccctaccaactgaactaagctcatgagaat 87  Q
    ||||| |||| |||||||||||||||||| ||||||||| ||||||    
T  13395004 atatatcatgcattgtccctaccaactgagctaagctcacgagaat 13395049  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 82
Target Start/End: Original strand, 7717646 - 7717674
Alignment:
Q  54 ttgtccctaccaactgaactaagctcatg 82  Q
    |||||||||||||||||||||||||||||    
T  7717646 ttgtccctaccaactgaactaagctcatg 7717674  T

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