View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13103_low_6 (Length: 477)

Name: NF13103_low_6
Description: NF13103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13103_low_6
NF13103_low_6
[»] chr1 (11 HSPs)
chr1 (340-477)||(14702734-14702871)
chr1 (65-160)||(14669959-14670054)
chr1 (61-199)||(14664378-14664525)
chr1 (63-147)||(14676440-14676524)
chr1 (63-147)||(14683558-14683642)
chr1 (325-451)||(14668312-14668438)
chr1 (61-144)||(14654587-14654670)
chr1 (244-448)||(14665140-14665343)
chr1 (357-477)||(14715420-14715540)
chr1 (202-314)||(14715566-14715678)
chr1 (325-389)||(14707436-14707500)
[»] chr2 (4 HSPs)
chr2 (61-160)||(30731770-30731869)
chr2 (325-454)||(30732758-30732887)
chr2 (130-179)||(8979051-8979100)
chr2 (126-185)||(8995546-8995605)


Alignment Details
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 340 - 477
Target Start/End: Complemental strand, 14702871 - 14702734
Alignment:
Q  340 tgatttttacaacggactagattatatcatcagtcttggataatatcactatgatccgacacccctagagtcttactgtggagtttatcaaccgcacact 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14702871 tgatttttacaacggactagattatatcatcagtcttggataatatcactatgatccgacacccctagactcttactgtggagtttatcaaccgcacact 14702772  T
Q  440 ttgaatccaattcaaaatccacattctcaagctgcaat 477  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14702771 ttgaatccaattcaaaatccacattctcaagctgcaat 14702734  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 14669959 - 14670054
Alignment:
Q  65 agcccactaaagaatttcactaattcatctattagaacttgcatcagctagaaacaatcaatggtaatggtagtggtcattaatgcataagtaaaa 160  Q
    |||||||||||| ||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  14669959 agcccactaaagcatttcaccaattcatccattagaacttgcatcacctagaaacaatcaatggtaatggtaatggtcattaaagcataagtaaaa 14670054  T

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Target: chr1; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 61 - 199
Target Start/End: Original strand, 14664378 - 14664525
Alignment:
Q  61 atagagcccactaaagaatttcactaattcatctattagaacttgcatcagctagaaacaatcaatggtaatgg---------tagtggtcattaatgca 151  Q
    |||||| ||||||||| ||||||| |||||||| |||| ||| |||||||||||||||||||||||| ||||||         |||||||||||||||||    
T  14664378 atagaggccactaaagcatttcaccaattcatccattacaacatgcatcagctagaaacaatcaatgataatggtagtggtcatagtggtcattaatgca 14664477  T
Q  152 taagtaaaagtaaagttgaagaattaaaaattaatgttagaacaacaa 199  Q
    ||||||||| ||||||||| |||||||| ||||  | |||||||||||    
T  14664478 taagtaaaactaaagttgaggaattaaagattatcgatagaacaacaa 14664525  T

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Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 14676524 - 14676440
Alignment:
Q  63 agagcccactaaagaatttcactaattcatctattagaacttgcatcagctagaaacaatcaatggtaatggtagtggtcattaa 147  Q
    |||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||| || |||| |||||||||    
T  14676524 agagcccactaaagcatttcaccaattcatccattagaacttgcatcagctagaaacaatcaatggtgattgtagcggtcattaa 14676440  T

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Target: chr1; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 14683642 - 14683558
Alignment:
Q  63 agagcccactaaagaatttcactaattcatctattagaacttgcatcagctagaaacaatcaatggtaatggtagtggtcattaa 147  Q
    |||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||| || |||| |||||||||    
T  14683642 agagcccactaaagcatttcaccaattcatccattagaacttgcatcagctagaaacaatcaatggtgattgtagcggtcattaa 14683558  T

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Target: chr1; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 325 - 451
Target Start/End: Original strand, 14668312 - 14668438
Alignment:
Q  325 taataaactcaaccttgatttttacaacggactagattatatcatcagtcttggataatatcactatgatccgacacccctagagtcttactgtggagtt 424  Q
    ||||||||||| | || ||||||||||||||| ||| ||| ||  | |||| |||||||||||||  ||||||||||||||||| | |||||||||| ||    
T  14668312 taataaactcatctttaatttttacaacggacaagaatatctctacggtctcggataatatcacttagatccgacacccctagacttttactgtggaatt 14668411  T
Q  425 tatcaaccgcacactttgaatccaatt 451  Q
    |||||||| | ||||||||||||||||    
T  14668412 tatcaaccacgcactttgaatccaatt 14668438  T

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Target: chr1; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 61 - 144
Target Start/End: Original strand, 14654587 - 14654670
Alignment:
Q  61 atagagcccactaaagaatttcactaattcatctattagaacttgcatcagctagaaacaatcaatggtaatggtagtggtcat 144  Q
    |||||| ||||||||| ||||||| |||||||| |||| ||| |||||||||||||||||||||||| ||||||||||||||||    
T  14654587 atagaggccactaaagcatttcaccaattcatccattacaacatgcatcagctagaaacaatcaatgataatggtagtggtcat 14654670  T

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Target: chr1; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 244 - 448
Target Start/End: Original strand, 14665140 - 14665343
Alignment:
Q  244 gaatatcattgaaaatgtgaatactagctaaaaataaagtcgcaattgctaacacatgagcaacctcattgcccttttctg-taataaactcaaccttga 342  Q
    |||||||||||||||||   |  |||||||||||||| | |||  ||||||||||||||||||| |||||| | ||||||  | |||| ||||| | |      
T  14665140 gaatatcattgaaaatgcagaagctagctaaaaataaggccgcccttgctaacacatgagcaacgtcattgac-ttttctccttataagctcaatcatag 14665238  T
Q  343 tttttacaacggactagattatatcatcagtcttggataatatcactatgatccgacacccctagagtcttactgtggagtttatcaaccgcacactttg 442  Q
     ||||||||||||| |||||||||| || | || || ||| ||||||| ||||||||||| ||||| |||||||||||| || ||||||| | |||||||    
T  14665239 attttacaacggacaagattatatcttcgggctcgg-taacatcactaagatccgacacctctagactcttactgtggaattgatcaaccacgcactttg 14665337  T
Q  443 aatcca 448  Q
    ||||||    
T  14665338 aatcca 14665343  T

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Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 357 - 477
Target Start/End: Complemental strand, 14715540 - 14715420
Alignment:
Q  357 tagattatatcatcagtcttggataatatcactatgatccgacacccctagagtcttactgtggagtttatcaaccgcacactttgaatccaattcaaaa 456  Q
    ||||||||||||  | ||||||||||| | |||| |||| |||| |||||||   ||| |||||| |||||||||  |||||||||||||||||||||||    
T  14715540 tagattatatcaataatcttggataatgtaactaagatcggacaaccctagacgtttattgtggaatttatcaactacacactttgaatccaattcaaaa 14715441  T
Q  457 tccacattctcaagctgcaat 477  Q
    ||||| |||||| ||||||||    
T  14715440 tccaccttctcaggctgcaat 14715420  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 314
Target Start/End: Complemental strand, 14715678 - 14715566
Alignment:
Q  202 cttataggatttcattaattagaatatcgctaataagagtaggaatatcattgaaaatgtgaatactagctaaaaataaagtcgcaattgctaacacatg 301  Q
    ||||||| |||||||||||||||||||||| ||||  |||||||||||   |||||||| | | ||||||||||| ||| | ||   |  ||||||||||    
T  14715678 cttatagcatttcattaattagaatatcgcaaatagaagtaggaatattgatgaaaatgcggagactagctaaaagtaaggccgttttcactaacacatg 14715579  T
Q  302 agcaacctcattg 314  Q
    | |||||||||||    
T  14715578 accaacctcattg 14715566  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 14707500 - 14707436
Alignment:
Q  325 taataaactcaaccttgatttttacaacggactagattatatcatcagtcttggataatatcact 389  Q
    |||||||||||| ||| ||||||||||||||| ||||||| ||  | |||| |||||||||||||    
T  14707500 taataaactcaatcttaatttttacaacggacaagattatctctacggtctcggataatatcact 14707436  T

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Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 61 - 160
Target Start/End: Complemental strand, 30731869 - 30731770
Alignment:
Q  61 atagagcccactaaagaatttcactaattcatctattagaacttgcatcagctagaaacaatcaatggtaatggtagtggtcattaatgcataagtaaaa 160  Q
    |||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  30731869 atagagcccactaaagcatttcaccaattcatccattagaacttgcatcagctagaaacaatcaatggtaatggtaatggtcattaaagcataagtaaaa 30731770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 325 - 454
Target Start/End: Complemental strand, 30732887 - 30732758
Alignment:
Q  325 taataaactcaaccttgatttttacaacggactagattatatcatcagtcttggataatatcactatgatccgacacccctagagtcttactgtggagtt 424  Q
    ||||||||||| | || ||||||||||||||  ||||||| ||  | |||| |||||||| ||||  ||||||||||||||||| | |||||||||| ||    
T  30732887 taataaactcatctttaatttttacaacggataagattatctctacggtctcggataataccacttagatccgacacccctagacttttactgtggaatt 30732788  T
Q  425 tatcaaccgcacactttgaatccaattcaa 454  Q
    |||||||| | |||||||||||||||||||    
T  30732787 tatcaaccacgcactttgaatccaattcaa 30732758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 8979100 - 8979051
Alignment:
Q  130 aatggtagtggtcattaatgcataagtaaaagtaaagttgaagaattaaa 179  Q
    ||||||| ||| |||||||||||| |||||| ||||||||||||||||||    
T  8979100 aatggtaatggccattaatgcataggtaaaactaaagttgaagaattaaa 8979051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 8995605 - 8995546
Alignment:
Q  126 tggtaatggtagtggtcattaatgcataagtaaaagtaaagttgaagaattaaaaattaa 185  Q
    |||| |||||||||| ||||||||||||  ||||| ||||||||||||||| || |||||    
T  8995605 tggtgatggtagtggccattaatgcatagataaaactaaagttgaagaattgaagattaa 8995546  T

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