View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13103_low_8 (Length: 430)
Name: NF13103_low_8
Description: NF13103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13103_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 27717990 - 27718393
Alignment:
| Q |
1 |
ttctcctttgctgacttctatgattatgtcttgatggccgttggatctgttggggcatgcattcatggtgcatctgttcctgttttctttatcttttttg |
100 |
Q |
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| T |
27717990 |
ttctcctttgctgacttctatgattatgtcttgatggccgttggatctgttggggcatgcattcatggtgcatctgttcctgttttctttatcttctttg |
27718089 |
T |
|
| Q |
101 |
gaaaaattattaatgtcgtaggtttggcttacctttttcctaaagaagcttcccaccaagttgccaaggtttgtacttttaaataagttacaaactttta |
200 |
Q |
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| T |
27718090 |
ggaaaattattaatgtcgtaggtttggcttacctttttcctaaagaagcttcccaccaagttgccaaggtttgtacttttaaataagttacaaactttta |
27718189 |
T |
|
| Q |
201 |
tgtgttgtcctcttcccatgcattttccattagggaatcatgcatgttagtcttttttactcacatgcagttaaatatttactacaaga-taagagggtg |
299 |
Q |
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| T |
27718190 |
tgtgttgtcctcttcccatgcattttccactagggaa----ccatgttaatcttttttactcccatgcagttaaatatttactacaagattaagagggtg |
27718285 |
T |
|
| Q |
300 |
gataatagattaagtatgatataacgtaaataaaagtatgatcgataaatatgtagctatattagcctctnnnnnnntgtagctatattatatattttta |
399 |
Q |
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| T |
27718286 |
gataatagattaagtatgatataacgtaaataaaagtatgatcgataaatatgtagctatattagcctctaaaaaaatgtagctatattatatattttta |
27718385 |
T |
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| Q |
400 |
aacagttg |
407 |
Q |
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| T |
27718386 |
aacagttg |
27718393 |
T |
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Back To:
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 12514959 - 12515070
Alignment:
| Q |
62 |
ttcatggtgcatctgttcctgttttctttatcttttttggaaaaattattaatgtcgtaggtttggcttacctttttcctaaagaagcttcccaccaagt |
161 |
Q |
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|||||||||| ||||||||| |||||||||| || |||||||| | || ||||| | || |||||||| ||||| ||||| ||||| || ||| |||| |
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| T |
12514959 |
ttcatggtgcttctgttcctattttctttattttctttggaaagttgatcaatgttattggcttggcttatcttttccctaaggaagcctctcacaaagt |
12515058 |
T |
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| Q |
162 |
tgccaaggtttg |
173 |
Q |
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| T |
12515059 |
tgccaaggtttg |
12515070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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