View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13104_low_2 (Length: 417)
Name: NF13104_low_2
Description: NF13104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13104_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 32338862 - 32339083
Alignment:
| Q |
1 |
gattggggtgagacagttagccacgagttaaccatg-taaattaattcatttatccatggtcactataatatggctaaactacgccacattgatttatag |
99 |
Q |
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| T |
32338862 |
gattggggtgagacagttagccacgggttaaccatggtaaattaattaatttatccatggtcactataatatggctaaactacgccacattgatttatag |
32338961 |
T |
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| Q |
100 |
tatagagatcaaccagcatcaaacaaacatcatcaattttctgtttttattaagtattgatttaattgtcgagtagaaaacaaggaaggttatttactat |
199 |
Q |
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| T |
32338962 |
tatagagaccaaccagcatcaaacaaacatcatcaattttctgtttttattaagtattgatttaattgtcgagtagaaaacaaggaaggttatttactat |
32339061 |
T |
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| Q |
200 |
ttcattatctgggtgtatattt |
221 |
Q |
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| T |
32339062 |
tttattatctgggtgtatattt |
32339083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 233 - 400
Target Start/End: Original strand, 32339120 - 32339287
Alignment:
| Q |
233 |
atccatccaacaattctctccctcactcacgaatcaacatgaataaattgatatcgttcaaaaaactattttgcaagtcttaattatttccgactcttgt |
332 |
Q |
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| T |
32339120 |
atccatccaacaattctctccctcactcacaaatcaacatgagtaaattgatatcgttcaaaaaactattttgcaagtcttaattatttccgactcttgt |
32339219 |
T |
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| Q |
333 |
ctaaaattagagaaaacaagtgggaaattaggtagttcacctgatttgagccaaggattaaggagttg |
400 |
Q |
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| T |
32339220 |
ctaaaattagagaaaacaagtgggaagttaggtaattcacctgatttgagctaaggattaaggagttg |
32339287 |
T |
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