View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13104_low_3 (Length: 360)
Name: NF13104_low_3
Description: NF13104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13104_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 293
Target Start/End: Original strand, 22517353 - 22517630
Alignment:
| Q |
16 |
acctgatgcatcccaaaaagttatggctccattatggtgtccagttatgtacaagtttttgatgtttgaaaatccagagaagttggtagaattcaaatta |
115 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
22517353 |
acctgatgcatcccaaaaagttatgcctccattatggtgtccagttatgtacaagtttttgatgtttgaaaatccagagaagttggtagaattcaagtta |
22517452 |
T |
|
| Q |
116 |
atcccacctttgtggtttgtttcaattgaaataagttgtggatgattttttatcatctgattgtaatactcatctgcagaataaaacacaccggtgttgt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22517453 |
atcccacctttgtggtttgtttcaattgaaacaagttgtggatgatttttgatcatctgactgtaatactcatctgcagaataaaacacaccggtgttgt |
22517552 |
T |
|
| Q |
216 |
tggagatgaatatttctatggtggtgatgcttgaataaacaaatggtatcctcaccataatttcctttggtaatgagg |
293 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22517553 |
tggagatgttcttttctatggtggtgatgcttgaataaacaaatggtatcctcaccataatttcctttggtaaggagg |
22517630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 9710393 - 9710559
Alignment:
| Q |
19 |
tgatgcatcccaaaaagttatggctccattatggtgtccagttatgtacaagtttttgatgtttgaaaatccagagaagttggtagaattcaaattaatc |
118 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||| ||| |||| | |
|
|
| T |
9710393 |
tgatgcatcccaaaatgttatggctccattatggtgtccagttatgtacaagtttttaatgtttgaaaatccagtgaagttggcagaactcaggttaagc |
9710492 |
T |
|
| Q |
119 |
ccacctttgtggtttgtttcaattgaaataagttgtggatgattttttatcatctgattgtaatact |
185 |
Q |
| |
|
||| ||||||| ||||||||||||| |||||| ||||||| | |||| ||||| ||| | ||||||| |
|
|
| T |
9710493 |
ccatctttgtgatttgtttcaattggaataagctgtggataacttttgatcatttgactataatact |
9710559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University