View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13104_low_4 (Length: 269)
Name: NF13104_low_4
Description: NF13104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13104_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 19207329 - 19207093
Alignment:
| Q |
11 |
taattctaaaatagtagtaggtgatataaaagagtaaatgttagaaaagtgagtagtagtaataagaaaagagaagaaatagaaggagggaaaaagagca |
110 |
Q |
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| T |
19207329 |
taattctaaaatagtagtatgtgatataaaagaataaatgttagaaaagtgagtattg------agaagagaaaagaaatagagggagagaaaaagagca |
19207236 |
T |
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| Q |
111 |
ttacagtgtttccaagaccaatggagtagttggaaagagctgaagcaaatcgacaacaacgttggtaagtttgatgccaagtgtagtgacatgatccatg |
210 |
Q |
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| T |
19207235 |
ttacagtgtttccaagaccaatggagtagttggaaagagctgaagcaaatcgacaacaacgttggtaagtttgatgccaagtgtagtgacatgatccatg |
19207136 |
T |
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| Q |
211 |
aatgagtgattttctgttaggatgaaccttagctgctctttct |
253 |
Q |
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| T |
19207135 |
aatgagtgattttctgttaggatgaaccttagctgctctttct |
19207093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 253
Target Start/End: Original strand, 50257982 - 50258124
Alignment:
| Q |
111 |
ttacagtgtttccaagaccaatggagtagttggaaagagctgaagcaaatcgacaacaacgttggtaagtttgatgccaagtgtagtgacatgatccatg |
210 |
Q |
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|||| |||||||| ||| ||||||| |||||||||||| || || ||||||| || ||||| ||||| ||| |||| |||||||||| |||||||| |
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| T |
50257982 |
ttacggtgtttccgagagcaatggaacggttggaaagagcggaggcgaatcgacggcagcgttgataagtctgacgccatgtgtagtgacgggatccatg |
50258081 |
T |
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| Q |
211 |
aatgagtgattttctgttaggatgaaccttagctgctctttct |
253 |
Q |
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| T |
50258082 |
gatgatggattttctagttggatgaacctgagctgctctttct |
50258124 |
T |
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