View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13105_high_1 (Length: 785)
Name: NF13105_high_1
Description: NF13105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13105_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 652; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 19 - 778
Target Start/End: Original strand, 3571779 - 3572537
Alignment:
| Q |
19 |
ttgcattgcttccaaacataaactgtagaatacggtataatgacatttagtnnnnnnnntggtataatgacataaaattaggataaatgtgtttttatcc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3571779 |
ttgcattgcttccaaacataaactgtagaatatggtataatgacatttagtaaaaaaaatggtataatgacataaaattaggataaatgtgtttttatcc |
3571878 |
T |
|
| Q |
119 |
atggagccaaaaaagaaatattctttgtccttttgatgcaatacacaccacaaattaactagcaatgggaccaatatgtaatgtggtccctcttctacaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3571879 |
atggagccaaaaaagaaatattctttgtccatttgatgcaacacacaccacaaattaactagcaatgggaccaatatgtaatgtggtccctcttctacaa |
3571978 |
T |
|
| Q |
219 |
catatatataattatataccgttatatgcatgaatttgtacgttattgatcatcctatccagaaattacaattggcaaactctcattggatgaaaaagat |
318 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3571979 |
catata----attatataccgttatatgcatgaatttgtacgttattgatcatcctatccagaaattacaattggcaaactcttattggatgaaaaagat |
3572074 |
T |
|
| Q |
319 |
atttaatgatattattttaaaat---gtggatatttgatatgtttgggaaaggaagaaaataatttatagagtggtatgtggtttgagaagcaactgtaa |
415 |
Q |
| |
|
|||||||||||||||| || | | |||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||| |
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|
| T |
3572075 |
atttaatgatattattatatattattgtggatatttgatatgtttgggaaaggaagaaaataatttttaaagtgatatgtggtttgagaagcaactgtaa |
3572174 |
T |
|
| Q |
416 |
tgttcaaaaccaatagaaagttagatacatagatttcataagatatggacatttaatttatcttgttgaaaacaacatataaataacaccataacataac |
515 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
3572175 |
tgctcaaaaccaatagaaagttagatacatagatttcataagatatggacatttaatttatcttgttgaaaacaacatataaataacaccataccataac |
3572274 |
T |
|
| Q |
516 |
acattcaatatagccatcatcaacattgccaataaagatatttatttgtttacttagtaaacactaaaattctaccatggctgcttcaacaatgtctctc |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3572275 |
acattcaatatagccatcatcaacattgccaataaagatatttatttgtttacttagtaaacactaaaattctaccatggctgcttcaacaatgtctctc |
3572374 |
T |
|
| Q |
616 |
tcttcttcatcattggttgggaaggcaatcaagctttccccctctactccagaccttgtcatgggaagaattaccatgaggaaaacaaccaccaagaaga |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3572375 |
tcttcttcatcattggttgggaaggcaatcaagctttccccctctactccagaccttgtcatgggaagaattaccatgaggaaaacaaccaccaagaaga |
3572474 |
T |
|
| Q |
716 |
atgttccttctcgaagcccgtggtacggtccagaccgtgtcaagtacttgggtccattctctg |
778 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3572475 |
atgttccttctggaagcccatggtacggtccagaccgtgtcaagtacttgggtccattctctg |
3572537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 581 - 778
Target Start/End: Complemental strand, 3585594 - 3585397
Alignment:
| Q |
581 |
aaaattctaccatggctgcttcaacaatgtctctctcttcttcatcattggttgggaaggcaatcaagctttccccctctactccagaccttgtcatggg |
680 |
Q |
| |
|
||||| |||| |||||||||||||||||| ||||||| ||||||||| ||||||| |||||||||||||||||||| || |||||||||||||| ||||| |
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|
| T |
3585594 |
aaaatactacaatggctgcttcaacaatggctctctcatcttcatcaatggttggaaaggcaatcaagctttccccttcgactccagaccttgtgatggg |
3585495 |
T |
|
| Q |
681 |
aagaattaccatgaggaaaacaaccaccaagaagaatgttccttctcgaagcccgtggtacggtccagaccgtgtcaagtacttgggtccattctctg |
778 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| || ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3585494 |
aagaatcaccatgaggaaaacaaccaccaagaagactgctccttctggaagccagtggtacggtccagaccgtgtcaagtacttgggtccattctctg |
3585397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 592 - 778
Target Start/End: Original strand, 3575635 - 3575821
Alignment:
| Q |
592 |
atggctgcttcaacaatgtctctctcttcttcatcattggttgggaaggcaatcaagctttccccctctactccagaccttgtcatgggaagaattacca |
691 |
Q |
| |
|
|||||| | ||||||||| |||||||||||||| || |||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |||| |
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|
| T |
3575635 |
atggctacatcaacaatggctctctcttcttcaacaatggttgggaaggcaatcaagctttccccttccactccagaccttgtgatgggaagaatcacca |
3575734 |
T |
|
| Q |
692 |
tgaggaaaacaaccaccaagaagaatgttccttctcgaagcccgtggtacggtccagaccgtgtcaagtacttgggtccattctctg |
778 |
Q |
| |
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||||||||||||||| ||||||||| || |||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
3575735 |
tgaggaaaacaaccaacaagaagaacgtcccttctggaagcccgtggtacggtccagatcgtgtcaaatacttgggtccattctctg |
3575821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 559 - 776
Target Start/End: Original strand, 3563623 - 3563840
Alignment:
| Q |
559 |
atttgtttacttagtaaacactaaaattctaccatggctgcttcaacaatgtctctctcttcttcatcattggttgggaaggcaatcaagctttccccct |
658 |
Q |
| |
|
||||||||||||||||| | |||||| ||| ||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| | |
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|
| T |
3563623 |
atttgtttacttagtaaggaataaaatactaaaatggcggcttcaacaatgtctctctcttcttcatcatttgtagggaaggcaatcaagctttccccat |
3563722 |
T |
|
| Q |
659 |
ctactccagaccttgtcatgggaagaattaccatgaggaaaacaaccaccaagaagaatgttccttctcgaagcccgtggtacggtccagaccgtgtcaa |
758 |
Q |
| |
|
| || | |||| ||| |||||||| | || ||||||||| |||||||||||||| |||||||||| |||| || ||||||||||||||||||||||| |
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|
| T |
3563723 |
ccacccaagacattggggtgggaagagtcacaatgaggaaagcaaccaccaagaagtctgttccttctggaagtccttggtacggtccagaccgtgtcaa |
3563822 |
T |
|
| Q |
759 |
gtacttgggtccattctc |
776 |
Q |
| |
|
||||||||| |||||||| |
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|
| T |
3563823 |
gtacttgggcccattctc |
3563840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 564 - 776
Target Start/End: Original strand, 3569276 - 3569488
Alignment:
| Q |
564 |
tttacttagtaaacactaaaattctaccatggctgcttcaacaatgtctctctcttcttcatcattggttgggaaggcaatcaagctttccccctctact |
663 |
Q |
| |
|
|||||||||||| || ||||| | || |||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||||||| || ||| |
|
|
| T |
3569276 |
tttacttagtaagcaaaaaaataccacaatggctgcttcaacaatgtccctctcttcttcatcatttgtcgggaaggcaatcaaactttccccatccact |
3569375 |
T |
|
| Q |
664 |
ccagaccttgtcatgggaagaattaccatgaggaaaacaaccaccaagaagaatgttccttctcgaagcccgtggtacggtccagaccgtgtcaagtact |
763 |
Q |
| |
|
| |||| ||| |||||||| | || |||||||||||||||||||||||| ||||| ||| ||||||| |||||||||||||||||||| ||||||| |
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|
| T |
3569376 |
caagacattggggtgggaagagtcacaatgaggaaaacaaccaccaagaagtccgttccgtctggaagcccatggtacggtccagaccgtgtgaagtact |
3569475 |
T |
|
| Q |
764 |
tgggtccattctc |
776 |
Q |
| |
|
|||| |||||||| |
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|
| T |
3569476 |
tgggcccattctc |
3569488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 585 - 775
Target Start/End: Original strand, 13275581 - 13275767
Alignment:
| Q |
585 |
ttctaccatggctgcttcaacaatgtctctctcttcttcatcattggttgggaaggcaatcaagctttccccctctactccagaccttgtcatgggaaga |
684 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||| | |||||||| || ||||| |
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|
| T |
13275581 |
ttctacaatggctgcctcaacaatgtctctctcttcttcatcattggttggaaaggcaatcaaacttaacccctctacccaagaccttggtattggaagg |
13275680 |
T |
|
| Q |
685 |
attaccatgaggaaaacaaccaccaagaagaatgttccttctcgaagcccgtggtacggtccagaccgtgtcaagtacttgggtccattct |
775 |
Q |
| |
|
| ||||||| ||||||||||| ||||| ||| |||| |||| || ||||| ||||||||||||||||||||| |||| ||||||| |
|
|
| T |
13275681 |
gtcaccatga-aaaaacaaccac---aaagaaagtttcttcaggaagtccatggtatggtccagaccgtgtcaagtacctgggcccattct |
13275767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 78 - 284
Target Start/End: Original strand, 3568808 - 3569005
Alignment:
| Q |
78 |
tggtataatgacataaaattaggataaatgtgtttttatccatggagccaaa----aaagaaatattctttgtccttttgatgcaatacacaccacaaat |
173 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||| || |||||||| |||||||||||||||||||||||||||||| ||||||| |
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|
| T |
3568808 |
tggtataatgacataattttaggataaatgtttttttatctattgagccaaagaaaaaagaaatattctttgtccttttgatgcaa-------cacaaat |
3568900 |
T |
|
| Q |
174 |
taactagcaatgggaccaatatgtaatgtggtccctcttctacaacatatatataattatataccgttatatgcatgaatttgtacgttattgatcatcc |
273 |
Q |
| |
|
||||||||||||| ||||||||| | | ||||||||||||| |||| || ||| |||||||| |||| |||||||||||| |||||||| | || |
|
|
| T |
3568901 |
taactagcaatggtaccaatatgcactatggtccctcttcttcaac----tcatgattttataccgt--tatgtatgaatttgtacattattgattagcc |
3568994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 80 - 196
Target Start/End: Original strand, 8602413 - 8602528
Alignment:
| Q |
80 |
gtataatgacataaaa-ttaggataaatgtgtttttatccatggagccaaaaaagaaatattctttgtccttttgatgcaatacacaccacaaattaact |
178 |
Q |
| |
|
||||||| |||||||| ||||| |||||||||||| |||||| |||| |||||||||||| ||||||| ||||||| || |||||||||||||||||| |
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|
| T |
8602413 |
gtataataacataaaaattagg-taaatgtgtttt-atccattgagcaaaaaaagaaataagttttgtccatttgatgtaacacacaccacaaattaact |
8602510 |
T |
|
| Q |
179 |
agcaatgggaccaatatg |
196 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
8602511 |
agcaatgggaccaatatg |
8602528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 391 - 465
Target Start/End: Original strand, 3575427 - 3575500
Alignment:
| Q |
391 |
tatgtggtttgagaagcaactgtaatgttcaaaaccaatagaaagttagatacatagatttcataagatatggac |
465 |
Q |
| |
|
|||||||||||||| | || ||||||| || ||||||||||||| | | | | |||||||||||||||||||||| |
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|
| T |
3575427 |
tatgtggtttgagatgtaagtgtaatgctccaaaccaatagaaaatca-agatatagatttcataagatatggac |
3575500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 180
Target Start/End: Original strand, 8617387 - 8617497
Alignment:
| Q |
80 |
gtataatgacataaaattaggataaatgtgtttt---------tatccatggag-ccaaaaaagaaatattctttgtccttttgatgcaatacacaccac |
169 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||| ||| ||||||||||||| ||||||| |||||| ||| ||||| ||| |
|
|
| T |
8617387 |
gtataatgacataaaattaagataaatgtgttttatatgattatatccattgagaaaaaaaaagaaatatgttttgtccatttgattcaacacacaacac |
8617486 |
T |
|
| Q |
170 |
aaattaactag |
180 |
Q |
| |
|
||||||||||| |
|
|
| T |
8617487 |
aaattaactag |
8617497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 3568776 - 3568821
Alignment:
| Q |
19 |
ttgcattgcttccaaacataaactgtagaatacggtataatgacat |
64 |
Q |
| |
|
|||||||||||||||| |||||| ||| |||| ||||||||||||| |
|
|
| T |
3568776 |
ttgcattgcttccaaaaataaacggtaaaatatggtataatgacat |
3568821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 728 - 778
Target Start/End: Original strand, 38356807 - 38356857
Alignment:
| Q |
728 |
gaagcccgtggtacggtccagaccgtgtcaagtacttgggtccattctctg |
778 |
Q |
| |
|
||||||| |||||||| ||||||||||| |||||||| || |||||||||| |
|
|
| T |
38356807 |
gaagcccatggtacggcccagaccgtgttaagtacttaggcccattctctg |
38356857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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