View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13105_high_4 (Length: 468)
Name: NF13105_high_4
Description: NF13105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13105_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 41 - 451
Target Start/End: Complemental strand, 39580720 - 39580310
Alignment:
| Q |
41 |
atactccccactcatttcatccccgaatcagtcacacatttcaattacattaattctactggtcaaggcttatcttcttacactggcggtttattctcgc |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39580720 |
atactccccactcatttcatccccgaatcagtcacacatttcaattacattaattctactggtcaaggcttatcttcttacactggcggtttattctcgc |
39580621 |
T |
|
| Q |
141 |
gagccttggaaaccattcaccgtcttaccgtcggtggagaagccatcacaggggaaaacgatagcttatcaagaaagtggctaccagatgacagttacat |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39580620 |
gagccttggaaaccattcaccgtcttaccgtcggtggagaagccatcacaggggaaaacaatagcttatcaagaaagtggttaccagatgacagttacat |
39580521 |
T |
|
| Q |
241 |
cactaatccacataacgctaagaatggttactttggaggtgatattatacgcactgcaggtgatgaatctgatggtccaaattcaaatatacatattggt |
340 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39580520 |
cactaatccacataacgctaagaatggtttctttggaggtgatattaaacgcactgcaggtgatgaatctgatggtccaaattcaaatatacatattggt |
39580421 |
T |
|
| Q |
341 |
ccagacgctctttataatagtggcaaagagagtaaaaatggttcaaacggtttaaacataagttggagtgttcctgtgcaaaagaatattgatcattacc |
440 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39580420 |
ccagacgctctttataaaagtgccaaagagagtaaaaatggttcaaacggtttaaacataagttggagtgttcctgtggaaaagaatattgatcattacc |
39580321 |
T |
|
| Q |
441 |
tcaggcttcat |
451 |
Q |
| |
|
||||||||||| |
|
|
| T |
39580320 |
tcaggcttcat |
39580310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 222 - 451
Target Start/End: Complemental strand, 39544147 - 39543918
Alignment:
| Q |
222 |
taccagatgacagttacatcactaatccacataacgctaagaatggttactttggaggtgatattatacgcactgcaggtgatgaatctgatggtccaaa |
321 |
Q |
| |
|
|||||||||||||||| || ||||||||||| |||||||||||||||| ||||| || ||| |||| |||||||||| | || || ||| |||||||| |
|
|
| T |
39544147 |
taccagatgacagttatataactaatccacaaaacgctaagaatggttcctttgcagatgaaattaaacgcactgcaaataatacatatgaaggtccaaa |
39544048 |
T |
|
| Q |
322 |
ttcaaatatacatattggtccagacgctctttataatagtggcaaagagagtaaaaatggttcaaacggtttaaacataagttggagtgttcctgtgcaa |
421 |
Q |
| |
|
|||||||||| |||||| ||| |||||| ||||| | | || ||||||||| |||| ||||| || ||||||||||||||||||||||||||||| || |
|
|
| T |
39544047 |
ttcaaatatatatattgctccggacgctgtttatgaaactgccaaagagagcaaaagcggttctaaaggtttaaacataagttggagtgttcctgttgaa |
39543948 |
T |
|
| Q |
422 |
aagaatattgatcattacctcaggcttcat |
451 |
Q |
| |
|
|||| ||||||||||| ||| ||||||||| |
|
|
| T |
39543947 |
aagagtattgatcatttccttaggcttcat |
39543918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 206 - 451
Target Start/End: Complemental strand, 39511121 - 39510879
Alignment:
| Q |
206 |
ttatcaagaaagtggctaccagatgacagttacatcactaatccacataacgctaagaatggttactttggaggtgatattatacgcactgcaggtgatg |
305 |
Q |
| |
|
||||||||| | ||| ||| ||||||||| ||||| ||||||||||| || || |||| ||||| |||||| |||||||| || | ||||| ||||| |
|
|
| T |
39511121 |
ttatcaagagaatggttacgagatgacagatacataactaatccacaaaatgcgaagattggttcctttgg---tgatattaaacacgctgcaaatgatg |
39511025 |
T |
|
| Q |
306 |
aatctgatggtccaaattcaaatatacatattggtccagacgctctttataatagtggcaaagagagtaaaaatggttcaaacggtttaaacataagttg |
405 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||| | ||||||| | |||| |||||||| ||| |||||||| ||||||||||||||||| |
|
|
| T |
39511024 |
aatctgatggtccaaattcaagtatatatattggtccagatattgtttataaaactggccaagagagtgcaaacggttcaaaaggtttaaacataagttg |
39510925 |
T |
|
| Q |
406 |
gagtgttcctgtgcaaaagaatattgatcattacctcaggcttcat |
451 |
Q |
| |
|
|||||||||||||||||| | | | ||||||| ||||||||||||| |
|
|
| T |
39510924 |
gagtgttcctgtgcaaaaaactgtagatcatttcctcaggcttcat |
39510879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 207 - 451
Target Start/End: Complemental strand, 39524866 - 39524622
Alignment:
| Q |
207 |
tatcaagaaagtggctaccagatgacagttacatcactaatccacataacgctaagaatggttactttggaggtgatattatacgcactgcaggtgatga |
306 |
Q |
| |
|
|||||||| | ||| ||||||||||||| || || ||| |||| || |||||||||||||||| ||||| ||||||||||| |||||||||| |||||| |
|
|
| T |
39524866 |
tatcaagagaatggttaccagatgacagatatataactgatccccaaaacgctaagaatggttcctttgaaggtgatattaaacgcactgcaaatgatga |
39524767 |
T |
|
| Q |
307 |
atctgatggtccaaattcaaatatacatattggtccagacgctctttataatagtggcaaagagagtaaaaatggttcaaacggtttaaacataagttgg |
406 |
Q |
| |
|
||||| || | |||||||||||| | | || |||||||| | ||||||| | || ||||| |||| |||||||||| ||||||||||||||||||| |
|
|
| T |
39524766 |
atctgttgattcaaattcaaataaatacataggtccagatattgtttataaaactgccaaagtgagtgttaatggttcaatcggtttaaacataagttgg |
39524667 |
T |
|
| Q |
407 |
agtgttcctgtgcaaaagaatattgatcattacctcaggcttcat |
451 |
Q |
| |
|
|||||||||||| | |||||||| ||||||| ||| | ||||||| |
|
|
| T |
39524666 |
agtgttcctgtggagaagaatatagatcatttccttatgcttcat |
39524622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 374
Target Start/End: Complemental strand, 39575993 - 39575841
Alignment:
| Q |
222 |
taccagatgacagttacatcactaatccacataacgctaagaatggttactttggaggtgatattatacgcactgcaggtgatgaatctgatggtccaaa |
321 |
Q |
| |
|
||||||||||||| || | ||||||| ||| |||||||||||| | | ||||| ||||||||| |||||||||| |||| |||||||||||||| |
|
|
| T |
39575993 |
taccagatgacagatatgtaactaatctacaaaacgctaagaattgctcctttgacggtgatattccacgcactgcaaatgatacgtctgatggtccaaa |
39575894 |
T |
|
| Q |
322 |
ttcaaatatacatattggtccagacgctctttataatagtggcaaagagagta |
374 |
Q |
| |
|
||||||| | |||||| |||||| | ||||||| | |||||||||||||| |
|
|
| T |
39575893 |
ttcaaatcaatatattgctccagatattgtttataaaactggcaaagagagta |
39575841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 225 - 346
Target Start/End: Complemental strand, 39521348 - 39521227
Alignment:
| Q |
225 |
cagatgacagttacatcactaatccacataacgctaagaatggttactttggaggtgatattatacgcactgcaggtgatgaatctgatggtccaaattc |
324 |
Q |
| |
|
||||||||||||| | ||||||||||| |||||||||||| | | ||||| | | ||||| |||||||||| |||| |||||||||||||||||| |
|
|
| T |
39521348 |
cagatgacagttatgtaactaatccacaaaacgctaagaatcgctcctttgacgttcatattccacgcactgcaaatgatacatctgatggtccaaattc |
39521249 |
T |
|
| Q |
325 |
aaatatacatattggtccagac |
346 |
Q |
| |
|
|||| | |||||| ||||||| |
|
|
| T |
39521248 |
aaatcaatatattgctccagac |
39521227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University