View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13105_high_6 (Length: 413)
Name: NF13105_high_6
Description: NF13105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13105_high_6 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 7 - 413
Target Start/End: Original strand, 4925578 - 4925984
Alignment:
| Q |
7 |
caataaacttaggaatctcaccggtaagagagtttgttgaaaggtccaagacttgtaaggaatacaactgacccagattggaaggaattgagccactcaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4925578 |
caataaacttaggaatctcaccggtaagagagtttgttgaaaggtccaagacttgtaaggaatacaactgacccagattggaaggaattgagccactcaa |
4925677 |
T |
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| Q |
107 |
gttattaccagccaaagatagcagcttcagatccttcatctgtccaaggctagagggaatttgacctagtaatagatttctactgaggttcagggaaact |
206 |
Q |
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| T |
4925678 |
gttattaccagccaaagatagaagcttcagatccttcatctgtccgaggctagagggaatttgacctagtaataggtttctactgaggttcagggaaact |
4925777 |
T |
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| Q |
207 |
agagagaccgaatcacctaaagcaggtggaatgggtcctgaaatttgatttccagatgcatccaaaaaattcagtgatctgcacattttactaatattag |
306 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4925778 |
agagagaccgaatcccctaaagcaggtggaatgggtcctgaaatttgatttccagatgcatccaaaaaattcagtgatctgcacattttactaatattag |
4925877 |
T |
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| Q |
307 |
aaggaaactcaccagaaaacctattataactcacattcaaaagcaatgcatctaatccatcacatttctcaagtaaatatgtaggaaatagtccagtgag |
406 |
Q |
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| T |
4925878 |
aaggaaactcaccagaaaacctattataactcacattcaaaagcaatgcatctaatccatcacatttctcaagtaaatatgtaggaaatagtccagtgag |
4925977 |
T |
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| Q |
407 |
tttgttc |
413 |
Q |
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| T |
4925978 |
tttgttc |
4925984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 413
Target Start/End: Complemental strand, 4943832 - 4943428
Alignment:
| Q |
9 |
ataaacttaggaatctcaccggtaagagagtttgttgaaaggtccaagacttgtaaggaatacaactgacccagattggaaggaattgagccactcaagt |
108 |
Q |
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|||||||| |||||||||||||||||||||||||| || ||||||||||||||||| || |||| ||| ||||| ||| |||||||||||||||||||| |
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| T |
4943832 |
ataaactttggaatctcaccggtaagagagtttgtagacaggtccaagacttgtaaagagtacatctgtcccaggctggtaggaattgagccactcaagt |
4943733 |
T |
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| Q |
109 |
tattaccagccaaagatagcagcttcagatccttcatctgtccaaggctagagggaatttgacctagtaatagatttctactgaggttcagggaaactag |
208 |
Q |
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| T |
4943732 |
tattaccagccaaagataaaaacttcagaaccttcatctgtccaaggctggtgggaatctgaccttgtaacccgtttctactgaggttcagggaaacaag |
4943633 |
T |
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| Q |
209 |
agagaccgaatcacctaaagcaggtggaatgggtcctgaaatttgatttccagatgcatccaaaaaattcagtgatctgcacattttactaatattagaa |
308 |
Q |
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||||||| |||| ||||| | | ||||| |||| |||| ||| ||| |||||||||||||| ||||| ||| ||||||| |||||||||||||| |
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| T |
4943632 |
agagaccaaatcccctaacgtggagggaatttgtccagaaaattggtttttggatgcatccaaaaatttcagggatttgcacatgctactaatattagaa |
4943533 |
T |
|
| Q |
309 |
ggaaactcaccagaaaacctattataactcacattcaaaagcaatgcatctaatccatcacatttctcaagtaaatatgtaggaaatagtccagtgagtt |
408 |
Q |
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|||| ||||||||| | || ||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| | |
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| T |
4943532 |
ggaatctcaccagatagccgattataactgacattaaaaagcaatgcatctaatccatcacatttctcaaacaaatatgtaggaaatggtcccgtgagct |
4943433 |
T |
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| Q |
409 |
tgttc |
413 |
Q |
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||||| |
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| T |
4943432 |
tgttc |
4943428 |
T |
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