View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13105_high_9 (Length: 375)
Name: NF13105_high_9
Description: NF13105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13105_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 3 - 366
Target Start/End: Original strand, 21218858 - 21219221
Alignment:
| Q |
3 |
catgtccaagaaaatatatcttcattggggtaacctgccttgcttcgcaacagtcaggaattatgagctctattcccttaggatccgctgagcacagaag |
102 |
Q |
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| T |
21218858 |
catgtccaccaaaatatatcttcattggggtaacctgccttgcttcgcaacagtcaggaattatgagctctattcccttaggatccgctgagcacagaag |
21218957 |
T |
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| Q |
103 |
acaaaaaacaaataattacattagggatgtatattacaatgacacaaaatcttatagaatcgatacatacatacacacaaaacaataaataaaatgatcc |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21218958 |
acaaaaaacaaataattacattagggatgtatattacaatgacacaaaatcttatagaatcgatacatacatacacacagaacaataaataaaatgatcc |
21219057 |
T |
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| Q |
203 |
attaaccaggatatatcagcacagctgacaaatcagtcaaacattgctgtatactaaaagatctcatcaaaagtacgatagtgtaatcagtgaatcaagt |
302 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21219058 |
attaaccaggatatatcagcacagttgacaaatcagtcaaacattgctgtatactaaaagatctcatcaaaagtacgatagtgtaatcagtgaatcaagt |
21219157 |
T |
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| Q |
303 |
actatagttgcacaaaacaactatttagtaaaatataatcaagattccaggagtatgatgatgt |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21219158 |
actatagttgcacaaaacaactatttagtaaaatataatcaagattccaggagtatgatgatgt |
21219221 |
T |
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