View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13105_low_1 (Length: 3754)
Name: NF13105_low_1
Description: NF13105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13105_low_1 |
 | |
|
| [»] scaffold0685 (5 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 598; Significance: 0; HSPs: 32)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 306 - 1147
Target Start/End: Original strand, 29556025 - 29556863
Alignment:
| Q |
306 |
acatgctatagaaaatcggcacgccactgttagtctttctgttagttataataatgctcatgtgatgcgtatttttcttactttgatat-------tcag |
398 |
Q |
| |
|
||||| ||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
29556025 |
acatgttatagaaaaccggcacaccactgttagtctttctgttagttataatgatgctcatgtgatatatatttttcttactttgatatatatatttcag |
29556124 |
T |
|
| Q |
399 |
atgtggtatcaatttgcaaaggtttcagctgaggaagcagcaacaaaatttctaacagaaaacgacattgactacgttattatgaatccagcggtgacga |
498 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29556125 |
atgtggtaccaatttgcaaaggtttcagctgaggaagcagcaacaaaatttctaacagaaaacgacattgactacgttgttatgaatccagcggtgacga |
29556224 |
T |
|
| Q |
499 |
tagggcctctcttgcaaccagagcttaacggaagttcctccttaatttttgacttaataaacggtaacttctatcaactgataaaatgaagtttttgcgt |
598 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
29556225 |
tagggcctctcttacaaccagagcttaacggaagttcctccttaatttttgacttaataaagggtaacttctatttactgataaaatgtagtttttgcgt |
29556324 |
T |
|
| Q |
599 |
tgagttgaaatatttacaagaattttttcatcaaatttgttttccgagtaaaaacatccaaaaataatagacttcacttt-aaattcatcaactcaatct |
697 |
Q |
| |
|
| |||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
29556325 |
ttagttgaaataattacacgaattttttcatcaaatttgttttccaagcaaaaacatccaaaa-taatagacttcacttttaaatttatcaactcaatct |
29556423 |
T |
|
| Q |
698 |
cttgatgcaggttcgcaaacatttctgaatgctacttttggatggatcaatgtgaaggatgttgcgaacgctcatattcatgcatatgaggatgcttcag |
797 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29556424 |
cttgatgcaggttcacaaacatttctgaatgctacttttggatggatcaatgtgaaggatgttgcgaacgctcatattcatgcatatgaggatgcttcaa |
29556523 |
T |
|
| Q |
798 |
ctagtggaagatattgtttggctgaaagagttgcacacatatctgaacttgctattattttgcgcgatatgtacccgacattacaaatcccagacaagta |
897 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29556524 |
ctagtggaagatattgtttggctgaaagagttgcacacatatctgaacttgctattattttgcgtgatatgtacccgacattacaaatcccagacaagta |
29556623 |
T |
|
| Q |
898 |
attttgattattgaattaattaccatgatatatttaaaaactgannnnnnnnnnctttctaactttaaccgactaatatttacattttgtgaactatgta |
997 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| || |||||||||||||| ||||||||| | | | || |||||| |
|
|
| T |
29556624 |
attttgattattgaattaattatcatgatatatttaaaaacggatatttt-----tttctaactttaactgactaatatgtgaactatg-----tatgta |
29556713 |
T |
|
| Q |
998 |
atcagatgtgcgggcgataagcctttgatgcaaacatttcagatttccaaagaaaaggcaaagactttgggagttgaatttattcccctggaagggagcc |
1097 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||| ||||| |
|
|
| T |
29556714 |
atcaggtgtgcgggtgataagcctttgatgcaaacatttcagatttccaaagaaaaggcaaagacgttgggaattgaatttattccccttgaagtgagcc |
29556813 |
T |
|
| Q |
1098 |
ttagagaaatcgtagaaagtttcaaagaaaaagaatttgctaacttctaa |
1147 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29556814 |
ttagagagatcgtagaaagtttcaaagaaaaagaatttgctaacttctaa |
29556863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 316; E-Value: 1e-177
Query Start/End: Original strand, 3164 - 3691
Target Start/End: Original strand, 29560407 - 29560941
Alignment:
| Q |
3164 |
tttactgaatctttgtttaaacaatgggtaact-cagcattaatccaaattccaacatctcatatcatgattttataaacatgggcgggtcaatttattg |
3262 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29560407 |
tttactcaatctttgtttaaacaataggtaacttcagcattaatccagattccaacatctcatatcatgatt--ataaacatgggcgggtcaatttattg |
29560504 |
T |
|
| Q |
3263 |
gaacattgtttagattatgtatttaaaaatgccgttattctttccatcttttctaactaattttccattttgt----tatgttatcaggtgtgcagacga |
3358 |
Q |
| |
|
||| ||| | |||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29560505 |
gaatgttgctcgaattatgtatttaaagatgttgttattccttccatcttttctaactaattttccattttgtgaactatgttatcaggtgtgcagacga |
29560604 |
T |
|
| Q |
3359 |
taaatctttt---caag--tttcaagtttccaa-gagaaggcaaataccttggtaattgatttcattcccgtggaaatgagcctcaaagagatcatagaa |
3452 |
Q |
| |
|
|||| |||| ||| |||||||||||||| || ||||| || ||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29560605 |
taaactttttatgcaaacatttcaagtttccaaagaaaaggcgaagaccttggtaattgattttattcccctggaaatgagcctcaaagagatcatagaa |
29560704 |
T |
|
| Q |
3453 |
agtttcaatgnnnnnnngtttgctggtatgatatttcattgaggagaaaatgttgataatcttaatcatcatgttttggtttcagaaactctgcagaagg |
3552 |
Q |
| |
|
|||||||| | ||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29560705 |
agtttcaaagaaaaaaagtttgctagtatgatatttcattgaggaaaaaatgttgataatcttaatcat---gttttggtttcagaaactctgcagaagg |
29560801 |
T |
|
| Q |
3553 |
atgagttatttattaatgtgaa-taatgttgggtattgtgttaaaccaagccgttgtcattttgtgaaataaggtctagcttattgcataaatatttatg |
3651 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
29560802 |
atgagttatttattaatgtgaaataatgttgggtattgtgttaaaccaagccgttttcattttgcgaaataaggtctagcttattgcataaatatttacg |
29560901 |
T |
|
| Q |
3652 |
caagtgttcgaaagagtttataaaaatagtttatgatatg |
3691 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29560902 |
caagtgttctaaagagtttataaaaatagtttatgatatg |
29560941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 241; E-Value: 1e-132
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 29555703 - 29555995
Alignment:
| Q |
19 |
tattgacttttgagtgtttggttttcattacttcagacacaattaattgatccagctgtgaagggaagtcttaatgttttgaagtcatgtgcaatatcac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
29555703 |
tattgacttttgagtgtttggttttcattacttcagacacaattaattgatcctgctgtgaagggaagtcttaatgttttgagatcatgtgcaaaatcac |
29555802 |
T |
|
| Q |
119 |
catccgtgaaacgggttgtttttacttcttctattgctacagctttgtataatggaacacctcgaaccccagacaccgtagttgatgagacgtggttttc |
218 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
29555803 |
catctgtgaaacgggttgtttttacttcttccattgctacagctttgtataacggaacacctcgaaccccagacaccgtagtcgatgagacatggttttc |
29555902 |
T |
|
| Q |
219 |
aaatctagatctcttatgggaacaaaaggtgctccccttttccttgaacttattc-tggtaatgaaatttgaagatagtgcaagtagaacatg |
310 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29555903 |
aaatctagatctcttacgggaacaaaaggtgcaccccttttccttgaacttattcgtggtaatgaaatttgaagatagtgcaagtagaacatg |
29555995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 2789 - 3149
Target Start/End: Original strand, 29559603 - 29559947
Alignment:
| Q |
2789 |
ggaacaccctttacaagttcttttcataccttacctctttttaacgtaggacttgagttttttccaatataatatcaatcgtgaactaacatgttgtttt |
2888 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29559603 |
ggaacaacctttacaagttcttttcataccttatctctttttaatgtaggacttgagttttttccaatataatatcaatcgtgaactaacatgttgtttt |
29559702 |
T |
|
| Q |
2889 |
gtttgat--atatatagaagaactcgttgtgttaatcgccttttttatgaaattgtgtttttgatttttcggttgcaaatctcaacggcttgatgcaggt |
2986 |
Q |
| |
|
||||| | |||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||| || ||||||||||||| |
|
|
| T |
29559703 |
gtttggttgatatatagaagaactcattgtgttaattgccttttttatgaaattgt--ttttgatttt----------------acagcttgatgcaggt |
29559784 |
T |
|
| Q |
2987 |
tcagaaacatatagaaatgcttcttttggatggatcaacgtgaaggatgcttcaaatgcccatattaatgcatatgaagatgcttcagcaagtgaaagat |
3086 |
Q |
| |
|
|||||||||||||||| |||| |||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29559785 |
tcagaaacatatagaactgctgctttcagatggatcaacgtgaaggatgttgcaaacgcccatattaatgcatatgaagatgcttcagcaagtggaagat |
29559884 |
T |
|
| Q |
3087 |
attgtttggccgaaagagtgatgcatttctctgaagttgtaaccattttgtgtcgtatgtatc |
3149 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||| ||||||| || ||||||||| |
|
|
| T |
29559885 |
attgcttggccgaaagagtgatgcatttctctgaacttgtaaacattttgcgttgtatgtatc |
29559947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 202; E-Value: 1e-109
Query Start/End: Original strand, 1643 - 2230
Target Start/End: Original strand, 29558164 - 29558738
Alignment:
| Q |
1643 |
tatcactctgctgcacatattttttc-tgatttagtatttcttcataacaaatgtctcatgtgccgttctttttcgaacaaacttaagcctcctcgtgag |
1741 |
Q |
| |
|
|||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| |
|
|
| T |
29558164 |
tatcactctgctgcacatattttttcctaatttggtatttcttcataacaaatgtctcatgtgccgttctttttcagacaaacttaagcctcgttgtg-- |
29558261 |
T |
|
| Q |
1742 |
tgcctatttcatatatacacaaaacagaaatttcgaacatgctttacaacactgctgtattaacacaataaata-aatgcaaaaaccaacttacttgcag |
1840 |
Q |
| |
|
| | |||||| | |||| |||||| ||| ||||| ||||||||||||| | ||||||||||||||||| ||||||||||| | ||||||||||| |
|
|
| T |
29558262 |
-----aatacatata-aatcaaagcagaaagttcaaacatactttacaacactgttatattaacacaataaatataatgcaaaaacaaccttacttgcag |
29558355 |
T |
|
| Q |
1841 |
ccaaagaaacctcttttcacaatcaacgcggaggcggagggatgttcagctttcagaatgtgatgcttggtttgataaatt-aaactgcatacaagacac |
1939 |
Q |
| |
|
|| |||||||||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
29558356 |
ccgaagaaacctcttttcacagtcaac------acggaaggatgctcagctttcagaatgtgatgcttggtttgatcaattaaaactgcatacaag---- |
29558445 |
T |
|
| Q |
1940 |
ccaaagtaagcagaacaacttgcttttcacccattccacaaaaataaacatttactcaaaatttatataatttttcgaacaag-ttgactattataagac |
2038 |
Q |
| |
|
||||||||||||| |||||| || ||||| || |||||||| ||||||| |||||||||||||||| ||||||||| ||| | |||||||||||||| |
|
|
| T |
29558446 |
--aaagtaagcagaataacttgtttgtcaccaatgccacaaaa--aaacattcactcaaaatttatatagtttttcgaaaaagctggactattataagac |
29558541 |
T |
|
| Q |
2039 |
cacatcacttattccatatttgatttttatagaaccatccaatggtagtaccgaattttctgctgagca-----tccccacagaagaaacacgaccgctt |
2133 |
Q |
| |
|
||| |||| ||||||| |||| ||||||||||| ||||||| ||||| | |||| ||||| ||||||| | ||||| | ||||||| ||| | |
|
|
| T |
29558542 |
tacaccactgattccatgtttggtttttatagaatcatccaacggtagcaacgaagtttctcctgagcagactctgcccactgcagaaacatgacactat |
29558641 |
T |
|
| Q |
2134 |
ctttcttctctgagattatcttgataagagcatccgtaaactgttgccatcctatatttacatgtgcatttgtgttatcttcattcttcctgcctca |
2230 |
Q |
| |
|
||||||||||||||||| ||||||||| || ||||||||| |||| ||| ||||||||| ||||| |||||| ||||||||||||||||| ||||| |
|
|
| T |
29558642 |
ctttcttctctgagattgtcttgataacagaatccgtaaattgttcccagcctatatttgcatgtccatttgcattatcttcattcttcctacctca |
29558738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 146; E-Value: 8e-76
Query Start/End: Original strand, 1642 - 2006
Target Start/End: Complemental strand, 28282535 - 28282176
Alignment:
| Q |
1642 |
atatcactctgctgcacatattttttctgatttagtatttcttcataacaaatgtctcatgtgccgttctttttcgaacaaacttaagcctcctcgtgag |
1741 |
Q |
| |
|
|||||||| |||||| || ||||||||| ||||| |||||||||||||||| ||||||||||||| || | |||| ||||||||||||||| |||||| |
|
|
| T |
28282535 |
atatcactttgctgcgcacattttttctaatttactatttcttcataacaactgtctcatgtgcccttatatttcagacaaacttaagcctcgtcgtgaa |
28282436 |
T |
|
| Q |
1742 |
tgcctatttcatatatacacaaaacagaaatttcgaacatgctttacaacactgctgtattaacacaataaata-aatgcaaaaaccaacttacttgcag |
1840 |
Q |
| |
|
||||||||| ||||||||| || |||||| ||| ||||| ||||||||||||| | ||||||||||||||| | ||||||||||| ||||||||||||| |
|
|
| T |
28282435 |
tgcctattttatatatacattaagcagaaagttcaaacatactttacaacactgttatattaacacaataaaaataatgcaaaaactaacttacttgcag |
28282336 |
T |
|
| Q |
1841 |
ccaaagaaacctcttttcacaatcaacgcggaggcggagggatgttcagctttcagaatgtgatgcttggtttgataaattaaactgcatacaagacacc |
1940 |
Q |
| |
|
|| |||||||||| ||||||| | | | | | || |||||||||||||||||||| |||||||||||||||| |||||| ||| ||| |||||||| |
|
|
| T |
28282335 |
ccgaagaaacctcctttcacagt-agctc-----cagaaggatgttcagctttcagaatatgatgcttggtttgatcaattaagctgaatataagacacc |
28282242 |
T |
|
| Q |
1941 |
caaagtaagcagaacaacttgcttttcacccattccacaaaaataaacatttactcaaaatttata |
2006 |
Q |
| |
|
|||||| || |||| ||||||||| || |||||||| | |||||||||| |||| | ||||||||| |
|
|
| T |
28282241 |
caaagtgagaagaataacttgcttgtcgcccattccgctaaaataaacaattacgccaaatttata |
28282176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 129; E-Value: 1e-65
Query Start/End: Original strand, 1186 - 1454
Target Start/End: Complemental strand, 28283187 - 28282920
Alignment:
| Q |
1186 |
atcaaggaaaacaggctcaaaaaagcacttgaactctacatataaattatagttgccaatctatgggatcaatagccttttgttccggaagttggttagt |
1285 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||| | || ||||||||||||| |||| | ||||| ||| || ||||||||| |
|
|
| T |
28283187 |
atcaaggaaaacatgctcaaaaaagcacttgaactctacatgaaaattaaaatttccaatctatgggaccaatcccattttgctccagatattggttagt |
28283088 |
T |
|
| Q |
1286 |
tttagagaagtgcctgttcggagaaaatcaaataaacacaggaaagagtaagaatgaaaagttacttagattgataaaaggaaaactgatcaggtgattt |
1385 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||| ||| |||||||||||||| | ||||||||||||||| |||||||||||||||| | |
|
|
| T |
28283087 |
tttagagaagtgcctgttcagagaaaatcaaacaaacacaacaaaaagtaagaatgaaaaactgcttagattgataaaattaaaactgatcaggtga-at |
28282989 |
T |
|
| Q |
1386 |
atacatttagatcttatattgtggaaggtctgagtttcaacttgcgtcaagagtctttaacaaagctaa |
1454 |
Q |
| |
|
|||||||||||||||||| ||| ||| ||| ||||||||||||| ||||||||| |||| |||||||| |
|
|
| T |
28282988 |
atacatttagatcttataatgtataagatctaagtttcaacttgcttcaagagtccttaataaagctaa |
28282920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 116; E-Value: 7e-58
Query Start/End: Original strand, 2282 - 2457
Target Start/End: Complemental strand, 28290190 - 28290016
Alignment:
| Q |
2282 |
acaaacattttatgacctttaagtcaccaatactcttgattataagttcacaaaaatgaaaaatatctaacctatgtgaacagtattcagcaagagaacg |
2381 |
Q |
| |
|
|||||||| | ||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||| || |||||| |||||||||||||||| |
|
|
| T |
28290190 |
acaaacatatcatgacctttaagtcaccaacactcttgattagaagttcacaaaaatgtaaaatatctaacctgtgagaacagcattcagcaagagaacg |
28290091 |
T |
|
| Q |
2382 |
ccctgaaattaggtaaaagttgtgatcagagaatattttttgaaaaacaaaatttactaattaaagtcatgtttta |
2457 |
Q |
| |
|
||||||||||| | |||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28290090 |
ccctgaaatta-atcaaagctgtgatcagagaatagtttttgaaaaacaaaatttacgaattaaagtcatgtttta |
28290016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 110; E-Value: 2e-54
Query Start/End: Original strand, 980 - 1149
Target Start/End: Original strand, 29550239 - 29550408
Alignment:
| Q |
980 |
cattttgtgaactatgtaatcagatgtgcgggcgataagcctttgatgcaaacatttcagatttccaaagaaaaggcaaagactttgggagttgaattta |
1079 |
Q |
| |
|
||||| ||| ||||||| ||||| || || | |||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
29550239 |
catttggtggactatgttatcaggtgcgcagacgataagcctttgatgcaaacatttcaggtttccaaagaaaaggcaaagaccttaggagttgaattta |
29550338 |
T |
|
| Q |
1080 |
ttcccctggaagggagccttagagaaatcgtagaaagtttcaaagaaaaagaatttgctaacttctaatt |
1149 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
29550339 |
ttcccctggaagtgagccttagagagatcgtagaaagtttcaaagataaaaagtttgctaacttctaatt |
29550408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 107; E-Value: 2e-52
Query Start/End: Original strand, 689 - 911
Target Start/End: Original strand, 29549842 - 29550064
Alignment:
| Q |
689 |
actcaatctcttgatgcaggttcgcaaacatttctgaatgctacttttggatggatcaatgtgaaggatgttgcgaacgctcatattcatgcatatgagg |
788 |
Q |
| |
|
||||||| |||||||||||||| |||||| | |||||||| ||||||||||||| |||||||||||| |||| || || |||||||| ||||||||| |
|
|
| T |
29549842 |
actcaattgcttgatgcaggttcagaaacatatatgaatgctgcttttggatggattaatgtgaaggatattgcaaatgcacatattcaagcatatgaga |
29549941 |
T |
|
| Q |
789 |
atgcttcagctagtggaagatattgtttggctgaaagagttgcacacatatctgaacttgctattattttgcgcgatatgtacccgacattacaaatccc |
888 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||| | |||||||| |||| |||||||| || |||||||||||||||||||| || |
|
|
| T |
29549942 |
atgcttcagctagtggaagatattgtttggtcgaaagagtgatacatttttctgaactggctaagattttgcgtgacatgtacccgacattacaaattcc |
29550041 |
T |
|
| Q |
889 |
agacaagtaattttgattattga |
911 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
29550042 |
agacaagtaagtttgattattga |
29550064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 104; E-Value: 9e-51
Query Start/End: Original strand, 2279 - 2442
Target Start/End: Complemental strand, 28281928 - 28281766
Alignment:
| Q |
2279 |
tgcacaaacattttatgacctttaagtcaccaatactcttgattataagttcacaaaaatgaaaaatatctaacctatgtgaacagtattcagcaagaga |
2378 |
Q |
| |
|
|||||||| | |||||||| ||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||| || |||||| ||||||||||||| |
|
|
| T |
28281928 |
tgcacaaatagtttatgac-tttaagtcaccaatactattgattaaaagttcacaaaaatgtaaaatatctaacctgtgagaacagcattcagcaagaga |
28281830 |
T |
|
| Q |
2379 |
acgccctgaaattaggtaaaagttgtgatcagagaatattttttgaaaaacaaaatttactaat |
2442 |
Q |
| |
|
|||||||||||||| || ||||||||| |||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
28281829 |
acgccctgaaattaagttaaagttgtggtcagagaatagtttttgaaaaacaaaatctactaat |
28281766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 95; E-Value: 2e-45
Query Start/End: Original strand, 394 - 564
Target Start/End: Original strand, 29549581 - 29549751
Alignment:
| Q |
394 |
ttcagatgtggtatcaatttgcaaaggtttcagctgaggaagcagcaacaaaatttctaacagaaaacgacattgactacgttattatgaatccagcggt |
493 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||| ||| ||||| ||||||||||||| || |
|
|
| T |
29549581 |
ttcagatgtggtatcaatttgcaaagacttcagctgaggaagctgcaacaaaatttctaacagaaaacaacatcgaccacgttgttatgaatccagcagt |
29549680 |
T |
|
| Q |
494 |
gacgatagggcctctcttgcaaccagagcttaacggaagttcctccttaatttttgacttaataaacggta |
564 |
Q |
| |
|
| | ||||||||||||| ||| |||||||||||| ||||||| | |||||| || |||||||||| |||| |
|
|
| T |
29549681 |
ggcattagggcctctcttacaatcagagcttaacgaaagttccactttaattcttaacttaataaatggta |
29549751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 91; E-Value: 5e-43
Query Start/End: Original strand, 1828 - 2006
Target Start/End: Complemental strand, 28290624 - 28290450
Alignment:
| Q |
1828 |
aacttacttgcagccaaagaaacctcttttcacaatcaacgcggaggcggagggatgttcagctttcagaatgtgatgcttggtttgataaattaaactg |
1927 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||| |||||||||||||||||||||| |||||| ||| |
|
|
| T |
28290624 |
aacttacttgcagccaaagaaacctcttttcacagtcaacacggagg------gatgttcagcttttagaatgtgatgcttggtttgatcaattaagctg |
28290531 |
T |
|
| Q |
1928 |
catacaagac--acccaaagtaagcagaacaacttgcttttcacccattccacaaaaataaacatttactcaaaatttata |
2006 |
Q |
| |
|
|||| ||||| ||| ||||||||||||| ||||||||| ||||||||||| | |||||||||| |||| | ||||||||| |
|
|
| T |
28290530 |
catataagacataccaaaagtaagcagaataacttgcttgtcacccattccgctaaaataaacaattacgccaaatttata |
28290450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 89; E-Value: 8e-42
Query Start/End: Original strand, 2079 - 2274
Target Start/End: Complemental strand, 28290441 - 28290241
Alignment:
| Q |
2079 |
aatggtagtaccgaattttctgctgagca-----tccccacagaagaaacacgaccgcttctttcttctctgagattatcttgataagagcatccgtaaa |
2173 |
Q |
| |
|
||||| ||||||||||||||| ||||||| |||||||| |||||||||||| |||| |||||||| ||||| ||||||||| | |||| || || |
|
|
| T |
28290441 |
aatggcagtaccgaattttctcctgagcagactctccccacatcagaaacacgaccccttccttcttctcagagatcgtcttgataacaacatctgtgaa |
28290342 |
T |
|
| Q |
2174 |
ctgttgccatcctatatttacatgtgcatttgtgttatcttcattcttcctgcctcaattgaaagctagttacaaaatactagtatacaaacataataca |
2273 |
Q |
| |
|
|||| ||| ||||||||| |||||| |||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28290341 |
ttgttcccagcctatatttgcatgtgaatttaaattatcttcattcttcctacctgaattgaaagctagttacaaaatactagtatacaaacataataca |
28290242 |
T |
|
| Q |
2274 |
c |
2274 |
Q |
| |
|
| |
|
|
| T |
28290241 |
c |
28290241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 88; E-Value: 3e-41
Query Start/End: Original strand, 2064 - 2274
Target Start/End: Complemental strand, 28282181 - 28281966
Alignment:
| Q |
2064 |
tttatagaaccatccaatggtagtaccgaattttctgctgagcat-----ccccacagaagaaacacgaccgcttctttcttctctgagattatcttgat |
2158 |
Q |
| |
|
||||||||| || | ||||| ||||||||||||||| |||||||| |||||||| |||||||| | |||| |||||||||||||| | ||||| |
|
|
| T |
28282181 |
tttatagaatcaactaatggcagtaccgaattttctcctgagcatactctccccacagcagaaacacaagtccttccttcttctctgagatcgttttgat |
28282082 |
T |
|
| Q |
2159 |
aagagcatccgtaaactgttgccatcctatatttacatgtgcatttgtgttatcttcattcttcctgcctcaattgaaagctagttacaaaatactagta |
2258 |
Q |
| |
|
|| |||||||||||| |||| ||| ||||| ||| |||||||||||| |||| |||||| |||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
28282081 |
aacagcatccgtaaattgttcccagcctatgtttgcatgtgcatttgcattattttcatttatcctacctgaattgaaagctagttacaaaatactagta |
28281982 |
T |
|
| Q |
2259 |
tacaaacataatacac |
2274 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
28281981 |
tacaaacataatacac |
28281966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 84; E-Value: 8e-39
Query Start/End: Original strand, 50 - 237
Target Start/End: Original strand, 29549277 - 29549464
Alignment:
| Q |
50 |
ttcagacacaattaattgatccagctgtgaagggaagtcttaatgttttgaagtcatgtgcaatatcaccatccgtgaaacgggttgtttttacttcttc |
149 |
Q |
| |
|
||||||| |||||||| || || ||||||||||||| |||||||||| ||||||||||||||| ||||||||| || |||| |||||||| |||||||| |
|
|
| T |
29549277 |
ttcagacgcaattaatcgaccctgctgtgaagggaactcttaatgttgtgaagtcatgtgcaaaatcaccatctgtacaacgagttgttttaacttcttc |
29549376 |
T |
|
| Q |
150 |
tattgctacagctttgtataatggaacacctcgaaccccagacaccgtagttgatgagacgtggttttcaaatctagatctcttatgg |
237 |
Q |
| |
|
|||||| |||||||| |||| ||||| |||||||||||| || | ||||||||| ||||||||||| |||| |||| |||||||| |
|
|
| T |
29549377 |
tattgccacagctttatatactggaaaacctcgaaccccggaagttgaagttgatgaaacgtggttttcgaatcaagatttcttatgg |
29549464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 76; E-Value: 5e-34
Query Start/End: Original strand, 1202 - 1325
Target Start/End: Complemental strand, 28290815 - 28290692
Alignment:
| Q |
1202 |
tcaaaaaagcacttgaactctacatataaattatagttgccaatctatgggatcaatagccttttgttccggaagttggttagttttagagaagtgcctg |
1301 |
Q |
| |
|
|||||||| ||| |||||| ||||| ||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
28290815 |
tcaaaaaatcaccggaactccacatacaaattatagttgccaatctatgggatcaaaccccttttgctccagaagttggttagttttagagaagtgcctg |
28290716 |
T |
|
| Q |
1302 |
ttcggagaaaatcaaataaacaca |
1325 |
Q |
| |
|
||| ||||||||||||| |||||| |
|
|
| T |
28290715 |
ttcagagaaaatcaaattaacaca |
28290692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 76; E-Value: 5e-34
Query Start/End: Original strand, 2974 - 3121
Target Start/End: Original strand, 29549850 - 29549997
Alignment:
| Q |
2974 |
gcttgatgcaggttcagaaacatatagaaatgcttcttttggatggatcaacgtgaaggatgcttcaaatgcccatattaatgcatatgaagatgcttca |
3073 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||| || ||||||||| | ||||||| |||||| | |||||||| |||||||| |
|
|
| T |
29549850 |
gcttgatgcaggttcagaaacatatatgaatgctgcttttggatggattaatgtgaaggatattgcaaatgcacatattcaagcatatgagaatgcttca |
29549949 |
T |
|
| Q |
3074 |
gcaagtgaaagatattgtttggccgaaagagtgatgcatttctctgaa |
3121 |
Q |
| |
|
|| |||| |||||||||||||| |||||||||||| ||||| |||||| |
|
|
| T |
29549950 |
gctagtggaagatattgtttggtcgaaagagtgatacatttttctgaa |
29549997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 75; E-Value: 2e-33
Query Start/End: Original strand, 1186 - 1395
Target Start/End: Complemental strand, 28297881 - 28297671
Alignment:
| Q |
1186 |
atcaaggaaaacaggctcaaaaaagcacttgaactctac-atataaattatagttgccaatctatgggatcaatagccttttgttccggaagttggttag |
1284 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||| | |||||||||||||||||||||||||||| || |||| | || |||||||| |
|
|
| T |
28297881 |
atcaaggaaaacaggctcaaaagtgcacttgaactctacaatagatattatagttgccaatctatgggatcaatccccgtttgcacaagatattggttag |
28297782 |
T |
|
| Q |
1285 |
ttttagagaagtgcctgttcggagaaaatcaaataaacacaggaaagagtaagaatgaaaagttacttagattgataaaaggaaaactgatcaggtgatt |
1384 |
Q |
| |
|
||| ||||||||||||| || | ||| |||||||||||||| ||||||||||||| ||| || |||||| |||||||||||| ||||||||| || |
|
|
| T |
28297781 |
tttgagagaagtgcctgctcaaacaaattcaaataaacacagtaaagagtaagaatacaaaattgcttagaacaataaaaggaaaatagatcaggtggtt |
28297682 |
T |
|
| Q |
1385 |
tatacatttag |
1395 |
Q |
| |
|
| |||||||| |
|
|
| T |
28297681 |
ttcacatttag |
28297671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 73; E-Value: 3e-32
Query Start/End: Original strand, 1231 - 1455
Target Start/End: Complemental strand, 28304994 - 28304775
Alignment:
| Q |
1231 |
attatagttgccaatctatgggatcaatagccttttgttccggaagttggttagttttagagaagtgcctgttcggagaaaatcaaataaacacaggaaa |
1330 |
Q |
| |
|
||||||||||||||||||||||| |||| || |||| ||| || || |||||| | |||||||||||||||| ||||||| |||||| ||||| |
|
|
| T |
28304994 |
attatagttgccaatctatgggaccaatgcccatttgctccagatatttgttagtctgagagaagtgcctgttcagagaaaagcaaatagacacaat--- |
28304898 |
T |
|
| Q |
1331 |
gagtaagaatgaaaagttacttagattgataaaaggaaaactgatcaggtgatttatacatttagatcttatattgtggaaggtctgagtttcaacttgc |
1430 |
Q |
| |
|
||||||||||||| || ||||| |||||||||||||||||||||| ||| ||| |||||||| | ||||| |||| ||| | |||||||||||| || |
|
|
| T |
28304897 |
--gtaagaatgaaaaattgcttagcttgataaaaggaaaactgatcaagtggtttttacatttacaccttatgatgtgtaagatatgagtttcaactcgc |
28304800 |
T |
|
| Q |
1431 |
gtcaagagtctttaacaaagctaaa |
1455 |
Q |
| |
|
||||||||| |||| ||||||||| |
|
|
| T |
28304799 |
ttcaagagtcattaataaagctaaa |
28304775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 72; E-Value: 1e-31
Query Start/End: Original strand, 1186 - 1345
Target Start/End: Original strand, 29557863 - 29558031
Alignment:
| Q |
1186 |
atcaaggaaaacaggctcaaaaaagcacttgaactctacatataaattatagttgccaatctatgggatcaa--tag---------ccttttgttccgga |
1274 |
Q |
| |
|
||||||||||||||||| |||||| | ||||||||||||||| ||||||||||||| ||||||||| | ||| ||| ||||||| ||| || |
|
|
| T |
29557863 |
atcaaggaaaacaggctaaaaaaacc-cttgaactctacata-aaattatagttgctaatctatggtaccaaattagtaccaatccccttttgctccaga |
29557960 |
T |
|
| Q |
1275 |
agttggttagttttagagaagtgcctgttcggagaaaatcaaataaacacaggaaagagtaagaatgaaaa |
1345 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
29557961 |
agttggttagttttagagaagtgcctgttcagagaaaatcaaataaacacagtaaagagtaagaataaaaa |
29558031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 72; E-Value: 1e-31
Query Start/End: Original strand, 980 - 1139
Target Start/End: Original strand, 29560570 - 29560729
Alignment:
| Q |
980 |
cattttgtgaactatgtaatcagatgtgcgggcgataagcctttgatgcaaacatttcagatttccaaagaaaaggcaaagactttgggagttgaattta |
1079 |
Q |
| |
|
||||||||||||||||| ||||| ||||| | |||||| | ||| |||||||||||||| |||||||||||||||| ||||| |||| | |||| |||| |
|
|
| T |
29560570 |
cattttgtgaactatgttatcaggtgtgcagacgataaactttttatgcaaacatttcaagtttccaaagaaaaggcgaagaccttggtaattgatttta |
29560669 |
T |
|
| Q |
1080 |
ttcccctggaagggagccttagagaaatcgtagaaagtttcaaagaaaaagaatttgcta |
1139 |
Q |
| |
|
||||||||||| |||||| | ||| ||| |||||||||||||||||||| | ||||||| |
|
|
| T |
29560670 |
ttcccctggaaatgagcctcaaagagatcatagaaagtttcaaagaaaaaaagtttgcta |
29560729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 62; E-Value: 1e-25
Query Start/End: Original strand, 1767 - 1867
Target Start/End: Complemental strand, 28278656 - 28278555
Alignment:
| Q |
1767 |
agaaatttcgaacatgctttacaacactgctgtattaacacaataaata-aatgcaaaaaccaacttacttgcagccaaagaaacctcttttcacaatca |
1865 |
Q |
| |
|
||||| ||| ||||| ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||| ||| |
|
|
| T |
28278656 |
agaaagttcaaacatactttataacactgctatattaacacaataaatagaatgcaaaaaccaacttacttgcagctaaagaaacctctttccacagtca |
28278557 |
T |
|
| Q |
1866 |
ac |
1867 |
Q |
| |
|
|| |
|
|
| T |
28278556 |
ac |
28278555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #24
Raw Score: 61; E-Value: 4e-25
Query Start/End: Original strand, 1754 - 1912
Target Start/End: Complemental strand, 19251321 - 19251168
Alignment:
| Q |
1754 |
atatacacaaaacagaaatttcgaacatgctttacaacactgctgtattaacacaataaataa-atgcaaaaaccaacttacttgcagccaaagaaacct |
1852 |
Q |
| |
|
||||| ||| |||||||| ||| ||||| |||||||||||||| |||||||||| |||||| ||||||||| || ||||||||||||||||||||||| |
|
|
| T |
19251321 |
atatatacacaacagaaagttcaaacatattttacaacactgctatattaacacagtaaatattatgcaaaaatcatcttacttgcagccaaagaaacct |
19251222 |
T |
|
| Q |
1853 |
cttttcacaatcaacgcggaggcggagggatgttcagctttcagaatgtgatgcttggtt |
1912 |
Q |
| |
|
|||||||| ||||| | ||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
19251221 |
tttttcacagtcaac------tcagagggatgtgcagcttttagaatgtgatgcttggtt |
19251168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #25
Raw Score: 59; E-Value: 7e-24
Query Start/End: Original strand, 2975 - 3105
Target Start/End: Original strand, 29556424 - 29556554
Alignment:
| Q |
2975 |
cttgatgcaggttcagaaacatatagaaatgcttcttttggatggatcaacgtgaaggatgcttcaaatgcccatattaatgcatatgaagatgcttcag |
3074 |
Q |
| |
|
||||||||||||||| |||||| | |||||| |||||||||||||||| |||||||||| | | || || |||||| |||||||||| ||||||||| |
|
|
| T |
29556424 |
cttgatgcaggttcacaaacatttctgaatgctacttttggatggatcaatgtgaaggatgttgcgaacgctcatattcatgcatatgaggatgcttcaa |
29556523 |
T |
|
| Q |
3075 |
caagtgaaagatattgtttggccgaaagagt |
3105 |
Q |
| |
|
| |||| ||||||||||||||| |||||||| |
|
|
| T |
29556524 |
ctagtggaagatattgtttggctgaaagagt |
29556554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #26
Raw Score: 59; E-Value: 7e-24
Query Start/End: Original strand, 738 - 828
Target Start/End: Original strand, 29559813 - 29559903
Alignment:
| Q |
738 |
gatggatcaatgtgaaggatgttgcgaacgctcatattcatgcatatgaggatgcttcagctagtggaagatattgtttggctgaaagagt |
828 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| |||||| |||||||||| ||||||||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
29559813 |
gatggatcaacgtgaaggatgttgcaaacgcccatattaatgcatatgaagatgcttcagcaagtggaagatattgcttggccgaaagagt |
29559903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #27
Raw Score: 49; E-Value: 6e-18
Query Start/End: Original strand, 1186 - 1258
Target Start/End: Complemental strand, 19251441 - 19251369
Alignment:
| Q |
1186 |
atcaaggaaaacaggctcaaaaaagcacttgaactctacatataaattatagttgccaatctatgggatcaat |
1258 |
Q |
| |
|
||||||||||||||||| ||||| | |||||||||||||||||| |||||||||||||| |||||||| |||| |
|
|
| T |
19251441 |
atcaaggaaaacaggctaaaaaatgtacttgaactctacatatagattatagttgccaaactatgggaccaat |
19251369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #28
Raw Score: 48; E-Value: 2e-17
Query Start/End: Original strand, 39 - 248
Target Start/End: Original strand, 29559196 - 29559402
Alignment:
| Q |
39 |
gttttcattacttcagacacaattaattgatccagctgtgaagggaagtcttaatgttttgaagtcatgtgcaatatcaccatccgtgaaacgggttgtt |
138 |
Q |
| |
|
|||||||||| |||||||||| ||||| || || || |||||||||| |||||||||| | ||||||||||| | ||| ||||| || ||||| |||||| |
|
|
| T |
29559196 |
gttttcattatttcagacacagttaatcgaccctgcagtgaagggaactcttaatgttcttaagtcatgtgcgaaatcgccatctgtcaaacgcgttgtt |
29559295 |
T |
|
| Q |
139 |
tttacttcttctattgctacagctttgtataatggaacacctcgaaccccagacaccgtagttgatgagacgtggttttcaaatctagatctcttatggg |
238 |
Q |
| |
|
| | |||||||||| | | | | |||||||||| || |||| || || |||||||||||||| ||||||||||||| |||| | ||||||| |
|
|
| T |
29559296 |
ataa---cttctattgcatctgttgtatataatggaaggcccagaactcctgaagttgtagttgatgagacatggttttcaaatccagatttattatggg |
29559392 |
T |
|
| Q |
239 |
aacaaaaggt |
248 |
Q |
| |
|
|||||||||| |
|
|
| T |
29559393 |
aacaaaaggt |
29559402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #29
Raw Score: 47; E-Value: 1e-16
Query Start/End: Original strand, 2078 - 2274
Target Start/End: Complemental strand, 28303191 - 28302996
Alignment:
| Q |
2078 |
caatggtagtaccgaattttctgctgagca-----tccccacagaagaaacacgaccgcttctttcttctctgagattatcttgataagagcatccgtaa |
2172 |
Q |
| |
|
||||||||||||| || ||||| ||||||| ||||||||| |||||||| || |||| ||||||| ||||||| ||||||||| || ||| |||| |
|
|
| T |
28303191 |
caatggtagtacctaagtttctcctgagcagactttccccacagcagaaacacaactccttccttcttctgtgagattgtcttgataacagtatcagtaa |
28303092 |
T |
|
| Q |
2173 |
actgttgccatcctatatttacatgtgcatttgtgttatcttcattcttcctgcctcaattgaaagctagttacaaaatactagtatacaaacataatac |
2272 |
Q |
| |
|
| |||| ||| ||| | ||| ||| | ||||| ||| | ||||||| || |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28303091 |
attgttcccagcctttttttgaatgagaatttg------cttggtgcttcctgactgaattgaaagctagttacaaaatactagtatacaagcataatac |
28302998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #30
Raw Score: 43; E-Value: 0.00000000000002
Query Start/End: Original strand, 3520 - 3574
Target Start/End: Original strand, 29550446 - 29550500
Alignment:
| Q |
3520 |
atcatgttttggtttcagaaactctgcagaaggatgagttatttattaatgtgaa |
3574 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
29550446 |
atcacgttttggtttcagaaactctgcataaggatgagttatttatcaatgtgaa |
29550500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.000000001
Query Start/End: Original strand, 2342 - 2392
Target Start/End: Complemental strand, 28302941 - 28302891
Alignment:
| Q |
2342 |
aaatatctaacctatgtgaacagtattcagcaagagaacgccctgaaatta |
2392 |
Q |
| |
|
||||||||||||| || |||||| |||||| |||||||||||||||||||| |
|
|
| T |
28302941 |
aaatatctaacctgtgagaacagcattcagtaagagaacgccctgaaatta |
28302891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.000000006
Query Start/End: Original strand, 3681 - 3734
Target Start/End: Original strand, 29556988 - 29557041
Alignment:
| Q |
3681 |
tttatgatatgtttataagttgttttcatcctattttcgtaagtcgctctaaat |
3734 |
Q |
| |
|
|||||||||||| || |||||||||||||| ||||||| ||||| ||||||||| |
|
|
| T |
29556988 |
tttatgatatgtgtagaagttgttttcatcttattttcataagttgctctaaat |
29557041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0685 (Bit Score: 465; Significance: 0; HSPs: 5)
Name: scaffold0685
Description:
Target: scaffold0685; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 306 - 911
Target Start/End: Original strand, 5124 - 5737
Alignment:
| Q |
306 |
acatgctatagaaaatcggcacgccactgttagtctttctgttagttataataatgctcatgtgatgcgtatttttcttactttgatat-------tcag |
398 |
Q |
| |
|
||||| ||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
5124 |
acatgttatagaaaaccggcacaccactgttagtctttctgttagttataatgatgctcatgtgatatatatttttcttactttgatatatatatttcag |
5223 |
T |
|
| Q |
399 |
atgtggtatcaatttgcaaaggtttcagctgaggaagcagcaacaaaatttctaacagaaaacgacattgactacgttattatgaatccagcggtgacga |
498 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5224 |
atgtggtaccaatttgcaaaggtttcagctgaggaagcagcaacaaaatttctaacagaaaacgacattgactacgttgttatgaatccagcggtgacga |
5323 |
T |
|
| Q |
499 |
tagggcctctcttgcaaccagagcttaacggaagttcctccttaatttttgacttaataaacggtaacttctatcaactgataaaatgaagtttttgcgt |
598 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
5324 |
tagggcctctcttacaaccagagcttaacggaagttcctccttaatttttgacttaataaagggtaacttctatttactgataaaatgtagtttttgcgt |
5423 |
T |
|
| Q |
599 |
tgagttgaaatatttacaagaattttttcatcaaatttgtttt-ccgagtaaaaacatccaaaaataatagacttcacttt-aaattcatcaactcaatc |
696 |
Q |
| |
|
| |||||||||| ||||| |||||||||||||||||||||||| || || |||||||||||||| |||||||||||||||| ||||| |||||||||||| |
|
|
| T |
5424 |
ttagttgaaataattacacgaattttttcatcaaatttgtttttccaagcaaaaacatccaaaa-taatagacttcacttttaaatttatcaactcaatc |
5522 |
T |
|
| Q |
697 |
tcttgatgcaggttcgcaaacatttctgaatgctacttttggatggatcaatgtgaaggatgttgcgaacgctcatattcatgcatatgaggatgcttca |
796 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5523 |
tcttgatgcaggttcacaaacatttctgaatgctacttttggatggatcaatgtgaaggatgttgcgaacgctcatattcatgcatatgaggatgcttca |
5622 |
T |
|
| Q |
797 |
gctagtggaagatattgtttggctgaaagagttgcacacatatctgaacttgctattattttgcgcgatatgtacccgacattacaaatcccagacaagt |
896 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
5623 |
actagtggaagatattgtttggctgaaagagttgcacacatatctgaacttgctattattttgcgtgatatgtacccgacattacaaattccagacaagt |
5722 |
T |
|
| Q |
897 |
aattttgattattga |
911 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
5723 |
aagtttgattattga |
5737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0685; HSP #2
Raw Score: 110; E-Value: 2e-54
Query Start/End: Original strand, 980 - 1149
Target Start/End: Original strand, 5912 - 6081
Alignment:
| Q |
980 |
cattttgtgaactatgtaatcagatgtgcgggcgataagcctttgatgcaaacatttcagatttccaaagaaaaggcaaagactttgggagttgaattta |
1079 |
Q |
| |
|
||||| ||| ||||||| ||||| || || | |||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
5912 |
catttggtggactatgttatcaggtgcgcagacgataagcctttgatgcaaacatttcaggtttccaaagaaaaggcaaagaccttaggagttgaattta |
6011 |
T |
|
| Q |
1080 |
ttcccctggaagggagccttagagaaatcgtagaaagtttcaaagaaaaagaatttgctaacttctaatt |
1149 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
6012 |
ttcccctggaagtgagccttagagagatcgtagaaagtttcaaagataaaaagtttgctaacttctaatt |
6081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0685; HSP #3
Raw Score: 107; E-Value: 2e-52
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 4964 - 5094
Alignment:
| Q |
181 |
cgaaccccagacaccgtagttgatgagacgtggttttcaaatctagatctcttatgggaacaaaaggtgctccccttttccttgaacttattc-tggtaa |
279 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
4964 |
cgaaccccagacaccgtagtcgatgagacatggttttcaaatctagatctcttacgggaacaaaaggtgcaccccttttccttgaacttattcgtggtaa |
5063 |
T |
|
| Q |
280 |
tgaaatttgaagatagtgcaagtagaacatg |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
5064 |
tgaaatttgaagatagtgcaagtagaacatg |
5094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0685; HSP #4
Raw Score: 59; E-Value: 7e-24
Query Start/End: Original strand, 2975 - 3105
Target Start/End: Original strand, 5524 - 5654
Alignment:
| Q |
2975 |
cttgatgcaggttcagaaacatatagaaatgcttcttttggatggatcaacgtgaaggatgcttcaaatgcccatattaatgcatatgaagatgcttcag |
3074 |
Q |
| |
|
||||||||||||||| |||||| | |||||| |||||||||||||||| |||||||||| | | || || |||||| |||||||||| ||||||||| |
|
|
| T |
5524 |
cttgatgcaggttcacaaacatttctgaatgctacttttggatggatcaatgtgaaggatgttgcgaacgctcatattcatgcatatgaggatgcttcaa |
5623 |
T |
|
| Q |
3075 |
caagtgaaagatattgtttggccgaaagagt |
3105 |
Q |
| |
|
| |||| ||||||||||||||| |||||||| |
|
|
| T |
5624 |
ctagtggaagatattgtttggctgaaagagt |
5654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0685; HSP #5
Raw Score: 43; E-Value: 0.00000000000002
Query Start/End: Original strand, 3520 - 3574
Target Start/End: Original strand, 6119 - 6173
Alignment:
| Q |
3520 |
atcatgttttggtttcagaaactctgcagaaggatgagttatttattaatgtgaa |
3574 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
6119 |
atcacgttttggtttcagaaactctgcataaggatgagttatttatcaatgtgaa |
6173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 4e-28; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-28
Query Start/End: Original strand, 745 - 898
Target Start/End: Original strand, 25935843 - 25935996
Alignment:
| Q |
745 |
caatgtgaaggatgttgcgaacgctcatattcatgcatatgaggatgcttcagctagtggaagatattgtttggctgaaagagttgcacacatatctgaa |
844 |
Q |
| |
|
||||||||| |||||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||| | |||| || ||| |
|
|
| T |
25935843 |
caatgtgaaagatgttgctaacgcccatattctggcatatgagactgcttcagctagtggaagatattgtttggctgagagagtggtacactattcagaa |
25935942 |
T |
|
| Q |
845 |
cttgctattattttgcgcgatatgtacccgacattacaaatcccagacaagtaa |
898 |
Q |
| |
|
|||||||| ||||| || ||| ||||||| || |||||||| ||||||||||| |
|
|
| T |
25935943 |
cttgctatgattttacgtgatctgtacccaactttacaaatttcagacaagtaa |
25935996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-17
Query Start/End: Original strand, 735 - 898
Target Start/End: Original strand, 26102982 - 26103145
Alignment:
| Q |
735 |
ttggatggatcaatgtgaaggatgttgcgaacgctcatattcatgcatatgaggatgcttcagctagtggaagatattgtttggctgaaagagttgcaca |
834 |
Q |
| |
|
|||||||| |||||||||| |||||||| ||||| || ||||| ||||||||| |||||||||||||||||| | || ||||| || ||||| | ||| |
|
|
| T |
26102982 |
ttggatgggtcaatgtgaaagatgttgctaacgcccacattcacgcatatgagattgcttcagctagtggaaggtgtttgttggcggagagagtggtaca |
26103081 |
T |
|
| Q |
835 |
catatctgaacttgctattattttgcgcgatatgtacccgacattacaaatcccagacaagtaa |
898 |
Q |
| |
|
| || ||||||||||| ||||| || ||| ||||||| || |||| ||| ||||||||||| |
|
|
| T |
26103082 |
ctattcagaacttgctatgattttacgtgatttgtacccaacgttaccaatttcagacaagtaa |
26103145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 745 - 873
Target Start/End: Original strand, 26123034 - 26123162
Alignment:
| Q |
745 |
caatgtgaaggatgttgcgaacgctcatattcatgcatatgaggatgcttcagctagtggaagatattgtttggctgaaagagttgcacacatatctgaa |
844 |
Q |
| |
|
||||||||| |||||||| | |||||||| ||||||||||| ||||||||| | ||||||||||| ||||| || ||||| ||||| || || |
|
|
| T |
26123034 |
caatgtgaaagatgttgctgaagctcatataaatgcatatgagattgcttcagccaatggaagatatttgttggcggagagagtgacacactattcacaa |
26123133 |
T |
|
| Q |
845 |
cttgctattattttgcgcgatatgtaccc |
873 |
Q |
| |
|
|| |||| ||||||||| ||||||||||| |
|
|
| T |
26123134 |
ctcgctagtattttgcgtgatatgtaccc |
26123162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.00000000002
Query Start/End: Original strand, 713 - 818
Target Start/End: Original strand, 108227 - 108332
Alignment:
| Q |
713 |
caaacatttctgaatgctacttttggatggatcaatgtgaaggatgttgcgaacgctcatattcatgcatatgaggatgcttcagctagtggaagatatt |
812 |
Q |
| |
|
|||||||||| ||| ||||||| |||||| | ||||||| |||||||| || || ||||||| || || ||| |||||||||||||||||||| ||| |
|
|
| T |
108227 |
caaacatttccaaattctactttgggatgggtgtatgtgaaagatgttgcaaatgcccatattctggcgtacgagaatgcttcagctagtggaagacatt |
108326 |
T |
|
| Q |
813 |
gtttgg |
818 |
Q |
| |
|
|||||| |
|
|
| T |
108327 |
gtttgg |
108332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000009
Query Start/End: Original strand, 3669 - 3724
Target Start/End: Complemental strand, 4576891 - 4576836
Alignment:
| Q |
3669 |
ttataaaaatagtttatgatatgtttataagttgttttcatcctattttcgtaagt |
3724 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||| |||| | ||||||| ||||| |
|
|
| T |
4576891 |
ttatgaaaatagtttatgacatgtttataagttgtgttcagcttattttcataagt |
4576836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 3631 - 3685
Target Start/End: Original strand, 25277998 - 25278052
Alignment:
| Q |
3631 |
cttattgcataaatatttatgcaagtgttcgaaagagtttataaaaatagtttat |
3685 |
Q |
| |
|
||||| ||||||| | ||||||||||||| ||||||| |||||||||||| |||| |
|
|
| T |
25277998 |
cttatggcataaacaattatgcaagtgtttgaaagagcttataaaaataggttat |
25278052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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