View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13105_low_12 (Length: 308)
Name: NF13105_low_12
Description: NF13105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13105_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 10132825 - 10133116
Alignment:
| Q |
1 |
cactaaagatggtcagtcatagttccgagcataataactactaaaggtggcaaaaacagacagtaatactttaccccaataaagtaataacatgtttaac |
100 |
Q |
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| T |
10132825 |
cactaaagatggtcagtcatagttctgagcatagtaactactaaaggtggcaaaaacagactgtaatactttaccccaataaagtaataacatgtttaac |
10132924 |
T |
|
| Q |
101 |
cnnnnnnntctcatgtgaaattcctaacctattcttaaagtattgaaaaatatgcaagttccagagtcatgcatataaacacatgaaagcataaatttca |
200 |
Q |
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| T |
10132925 |
caaaaaaatctcatgtgaaattcctaacctattcttaaagtattgaaaaatatgcaagttccagagtcatgcatataaacacatgaaagcataaatttca |
10133024 |
T |
|
| Q |
201 |
aaatttaaatcatatatatactatagcatcaagacagaaagcaatagaagaaagaaaaaacaggaacatatgtatgatgataaagtatatac |
292 |
Q |
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|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10133025 |
aattttaaatcatatatataccatagcatcaagacagaaagcaatagaagaaagaaaaaacaggaacatatgtatgatgataaagtatatac |
10133116 |
T |
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