View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13105_low_15 (Length: 251)
Name: NF13105_low_15
Description: NF13105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13105_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 24 - 241
Target Start/End: Complemental strand, 39299431 - 39299206
Alignment:
| Q |
24 |
ttactttgcaagtgaataatagctacataatatagactcctatttataatatgac--------ggtgtaaaatatatttacaccatatcaattaaatctt |
115 |
Q |
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| T |
39299431 |
ttactttgcaagtgaataatagctacataatatagactcctatttataatatgacattatgacggtgtaaaatatatttacaccatatcaattaaatctt |
39299332 |
T |
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| Q |
116 |
atttttaaatgcaaaacaataagtacaagaaattggcatgtaatagaacatggaaaagtgtaggagtgaaagaaactgtgtgataggtggccagagaata |
215 |
Q |
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| T |
39299331 |
atttttaaatgcaaaacaataagttcaagaaattggcatgtaatagaacatggaaaagtgtaggagtgaaagaaattgtgtgataggtggccagagaata |
39299232 |
T |
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| Q |
216 |
ttacagttgaatgaaaagggcctttg |
241 |
Q |
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| T |
39299231 |
ttacagttgaatgaaaagggcctttg |
39299206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 241
Target Start/End: Complemental strand, 26878964 - 26878877
Alignment:
| Q |
154 |
tgtaatagaacatggaaaagtgtaggagtgaaagaaactgtgtgataggtggccagagaatattacagttgaatgaaaagggcctttg |
241 |
Q |
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| T |
26878964 |
tgtaatagaacatggaaaagtgtaggagtgaagcaaattgtgttataggtggtcgtagaatattacagttgaatgaaaagggcctttg |
26878877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 26879364 - 26879328
Alignment:
| Q |
39 |
ataatagctacataatatagactcctatttataatat |
75 |
Q |
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| T |
26879364 |
ataataactacataatatagactcctatttagaatat |
26879328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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