View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13105_low_3 (Length: 741)
Name: NF13105_low_3
Description: NF13105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13105_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 18 - 593
Target Start/End: Complemental strand, 28611847 - 28611270
Alignment:
| Q |
18 |
ttccttactcttatgtattcacttttgcataaacgatgacagaatgatactgctaatgtgatttctacaatgctgtttctttccggcatcacaacaatac |
117 |
Q |
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| T |
28611847 |
ttccatactcatatgtattcacttttgcatcaatgatgacagaacgatactgctaatgtgatttctacaatgctgtttctttccggcatcacaacaattc |
28611748 |
T |
|
| Q |
118 |
tccattcgtattttggtactcgacttcctttagttcaaggtagctcttttgtgtatttagcaccggcattagttatcatgaattccgaagagtttcgaaa |
217 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
28611747 |
tccattcgtactttggaactcgacttcctttagttcaaggtagctcatttgtgtatttagcaccagcactagttatcatgaattccgaagagtttcgaaa |
28611648 |
T |
|
| Q |
218 |
tcttacacaccatgtaagtttcactgagagacnnnnnnntgttaattcatttgctttagattactgtttctggttttccatattaataatgtatcgttat |
317 |
Q |
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||||||||||||||||||||||||| | |||| ||||||||||||||| || || ||| ||||||||||||||||||||||||||||| || | |
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| T |
28611647 |
tcttacacaccatgtaagtttcacttatagacaaataaatgttaattcatttgcctttgaataccgtttctggttttccatattaataatgtattgtcgt |
28611548 |
T |
|
| Q |
318 |
aactgcagaaatttaggcacataatgagggaacttcaaggagctataattgttggttcaacattccaatgtattcttggatttagtggtttaatgtctct |
417 |
Q |
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| T |
28611547 |
aactgcagaaatttaggcacataatgagggaacttcaaggagctataattgttggttcaacattccaatgtattcttggatttagtggtttaatgtctct |
28611448 |
T |
|
| Q |
418 |
tcttctaaggtaacaaggagctgcatctagtctttcttgtattcccggttattatatagtttgttgataaccttttctccttat---tattcattagtta |
514 |
Q |
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| T |
28611447 |
tcttctaaggtaacaaggagctggatctagtctttcttgtattcccggttattacatagtttgtcgataaccttctctccttattattattcattagtta |
28611348 |
T |
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| Q |
515 |
gtttaggttgttttatttctgccgtagtttgttaagtaatttaagggataaagggagttattcatcctctaaagaattc |
593 |
Q |
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| T |
28611347 |
gtttaggttgttttatttctgccatagttt-ttaagttatttaagggatattgggagttatttatcctttaaataattc |
28611270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 658 - 740
Target Start/End: Complemental strand, 28611269 - 28611187
Alignment:
| Q |
658 |
ttcatcaggtaataccggttagtttgataaatttcagatggcaaagaaatatctttcatcttttcatgttcaaactagtaatt |
740 |
Q |
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| T |
28611269 |
ttcatcaagtaataccagttagtttgataaatttctgatgggaaaaaaatatctttcatcttttcatgttcaaactagtaatt |
28611187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 2e-36; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 52 - 190
Target Start/End: Complemental strand, 13730407 - 13730269
Alignment:
| Q |
52 |
gatgacagaatgatactgctaatgtgatttctacaatgctgtttctttccggcatcacaacaatactccattcgtattttggtactcgacttcctttagt |
151 |
Q |
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|||||||||| |||||||||| || |||||||||||| |||||||||||||||||||||| ||||| || | || |||||||| |||||||||||||| |
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| T |
13730407 |
gatgacagaaggatactgctaccgtaatttctacaatgttgtttctttccggcatcacaactatactgcactgttactttggtacccgacttcctttagt |
13730308 |
T |
|
| Q |
152 |
tcaaggtagctcttttgtgtatttagcaccggcattagt |
190 |
Q |
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| T |
13730307 |
gcaagggagctcgtttgtgtatttagcaccggcattagt |
13730269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 321 - 433
Target Start/End: Complemental strand, 13730034 - 13729922
Alignment:
| Q |
321 |
tgcagaaatttaggcacataatgagggaacttcaaggagctataattgttggttcaacattccaatgtattcttggatttagtggtttaatgtctcttct |
420 |
Q |
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||||||||||||| ||||||||||||||||| ||||| ||||||||||||| ||||| ||| |||||||| | ||||||||||| || |||||| | || |
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| T |
13730034 |
tgcagaaatttagacacataatgagggaactccaaggtgctataattgttgcttcaatatttcaatgtatcttgggatttagtggcttgatgtctatcct |
13729935 |
T |
|
| Q |
421 |
tctaaggtaacaa |
433 |
Q |
| |
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|| ||||||||| |
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|
| T |
13729934 |
actcaggtaacaa |
13729922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 595 - 671
Target Start/End: Complemental strand, 35807910 - 35807833
Alignment:
| Q |
595 |
tttgtaatcttttgttcaaccaattgatcagtgatatgagtttattta-gaagtttattcttcattcatcaggtaata |
671 |
Q |
| |
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||||||||||||||||||| |||||||| |||||||| |||||| | |||||||||||| |||||||| |||||| |
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| T |
35807910 |
tttgtaatcttttgttcaataaattgatcgatgatatgaatttattcataaagtttattctttattcatcaagtaata |
35807833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 474 - 548
Target Start/End: Complemental strand, 44271449 - 44271375
Alignment:
| Q |
474 |
tagtttgttgataaccttttctccttattattcattagttagtttaggttgttttatttctgccgtagtttgtta |
548 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||| |||||||||| |
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| T |
44271449 |
tagtttgttgataaccttttctccttatcattcattagttagtttagttagttttatttctgttatagtttgtta |
44271375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 591 - 664
Target Start/End: Complemental strand, 40472327 - 40472251
Alignment:
| Q |
591 |
ttcatttgtaatctttt--gttcaaccaattgatcagtgatatgagtttatttag-aagtttattcttcattcatca |
664 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||||||||||| || ||||||| ||||||||||||| |
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| T |
40472327 |
ttcatttgtaatcttttttgttcaaccaattgatcaatgatatgagtttattcagaaagtttactcttcattcatca |
40472251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 555 - 640
Target Start/End: Complemental strand, 5406874 - 5406786
Alignment:
| Q |
555 |
ttaagggataaagggagttattcatcctctaaagaat---tcatttgtaatcttttgttcaaccaattgatcagtgatatgagtttatt |
640 |
Q |
| |
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|||||||||| ||||||||||||| || |||| ||| |||||||||||||||| |||| |||||||||| |||| |||||||||| |
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| T |
5406874 |
ttaagggatattgggagttattcattctataaataatccgtcatttgtaatcttttactcaatcaattgatcaatgatgtgagtttatt |
5406786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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