View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13105_low_4 (Length: 481)
Name: NF13105_low_4
Description: NF13105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13105_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 54 - 470
Target Start/End: Original strand, 33440354 - 33440779
Alignment:
| Q |
54 |
aaatataacatctgattttgtgactgtcacgagtatgacgacaatgaagaactctgaacttct---taaagttgatgatgttggtggtcattgaaagttt |
150 |
Q |
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| T |
33440354 |
aaatataacacctgattttgtgactgtcacgagtatgaagacaatgaagaactctgaacttctacttaaagttgatgatgttggtggtcattgaaagttt |
33440453 |
T |
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| Q |
151 |
tcaacaacttataaacattatcaacttgtaaatcaggtgaaacacttctcccccaacaatcagctcaacctacatagacaaacataccagacatcatcat |
250 |
Q |
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| T |
33440454 |
tcaaccacttataaacattatcaacttgtaaatcaggtgaaacacttctcccccaacaatcagctcaacctacatagacaaacataccagacatcatcat |
33440553 |
T |
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| Q |
251 |
ttttaattgtctataatgctctgataaattgccaattattctgaccccgcgtttcacggaaagtgtttcaaactttcaacagcattgtccaattttatca |
350 |
Q |
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| T |
33440554 |
ttttaattggctataatgctctgataaattgccaattattctgaccccgcgtttcacggaaagtgtttcaaactttcaacagcattgtccaattttatca |
33440653 |
T |
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| Q |
351 |
catttcaccaataacatatatacatatgtataa------ttagtgaaaagagctagttttctactacatgaaaaattaatgttaaaaccctagctaaaaa |
444 |
Q |
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| T |
33440654 |
catttcaccaataacatatatacatatgtataattgaatttagtgaaaagagctagttttctactacatgaaaaattaatgttaaaaccctagctaaaaa |
33440753 |
T |
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| Q |
445 |
atgtgtgttgatatttagtatctgat |
470 |
Q |
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| T |
33440754 |
atgtgtgttgatatttagtatctgat |
33440779 |
T |
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