View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13105_low_6 (Length: 446)

Name: NF13105_low_6
Description: NF13105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13105_low_6
NF13105_low_6
[»] chr5 (1 HSPs)
chr5 (12-433)||(4978903-4979324)
[»] chr4 (3 HSPs)
chr4 (12-433)||(40403987-40404408)
chr4 (79-221)||(26735832-26735974)
chr4 (25-146)||(12062600-12062721)
[»] chr1 (4 HSPs)
chr1 (66-110)||(15041405-15041449)
chr1 (66-110)||(15002925-15002969)
chr1 (66-110)||(15037837-15037881)
chr1 (194-230)||(21151434-21151470)
[»] chr7 (9 HSPs)
chr7 (194-230)||(22804580-22804616)
chr7 (194-230)||(22808864-22808900)
chr7 (194-230)||(22814271-22814307)
chr7 (194-230)||(22830275-22830311)
chr7 (194-230)||(22839296-22839332)
chr7 (194-230)||(22875172-22875208)
chr7 (194-230)||(22879836-22879872)
chr7 (194-230)||(22888542-22888578)
chr7 (194-230)||(22893197-22893233)


Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 12 - 433
Target Start/End: Complemental strand, 4979324 - 4978903
Alignment:
Q  12 atcatcaacatgggcttcataattagaatcaagaaggatgttgtttgatttcacatctcgatgaacaataagcggggaacaatcatggtgtagatagcaa 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4979324 atcagcaacatgggcttcataattagaatcaagaaggatgttgtttgatttcacatctcgatgaacaataagcggggaacaatcatggtgtagatagcaa 4979225  T
Q  112 agtccctttgcagcctccacagcaattttataccttgtatcccaatacaaatgaccgcctttctttccatggagaacttcgcctaaacttccattaggca 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4979224 agtccctttgcagcctccacagcaattttataccttgtatcccaatacaaatgaccgcctttctttccatggagaacttcgcctaaacttccattaggca 4979125  T
Q  212 tgtactcataaaccaaaagatttgtctcatggtttgaacagaaacccaacaacctaacaatgtgcctatgtctaattctccccagtgtttgaatctcagc 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4979124 tgtactcataaaccaaaagatttgtctcatggtttgaacagaaacccaacaacctaacaatgtgcctatgtctaattctccccagtgtctgaatctcagc 4979025  T
Q  312 attgaatccatgatcatgagaagagcctctgctcataaccggaagccttttaacagcaacaagttccccattcggcattgcccctttgtagacaatgccc 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4979024 attgaatccatgatcatgagaagagcctctgctcataaccggaagccttttaacagcaacaagttccccattcggcattgcccctttgtagacaatgcca 4978925  T
Q  412 gcacctccttttccgatgatgt 433  Q
    |||||||||||||| |||||||    
T  4978924 gcacctccttttcctatgatgt 4978903  T

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Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 12 - 433
Target Start/End: Original strand, 40403987 - 40404408
Alignment:
Q  12 atcatcaacatgggcttcataattagaatcaagaaggatgttgtttgatttcacatctcgatgaacaataagcggggaacaatcatggtgtagatagcaa 111  Q
    |||| |||||||||||||| |    |||||||| | ||| ||||||||||||||||| ||||||||||| || || ||||| ||||| |||||||| |||    
T  40403987 atcagcaacatgggcttcaaagcctgaatcaagcaagatattgtttgatttcacatcacgatgaacaattagaggtgaacagtcatgatgtagataacaa 40404086  T
Q  112 agtccctttgcagcctccacagcaattttataccttgtatcccaatacaaatgaccgcctttctttccatggagaacttcgcctaaacttccattaggca 211  Q
    || ||||||||||| |||||||||||||| |||||||||||||||| ||||||||| |||||||| ||||| ||||||||||||||||||||||||||||    
T  40404087 agaccctttgcagcttccacagcaattttgtaccttgtatcccaatgcaaatgaccacctttcttaccatgaagaacttcgcctaaacttccattaggca 40404186  T
Q  212 tgtactcataaaccaaaagatttgtctcatggtttgaacagaaacccaacaacctaacaatgtgcctatgtctaattctccccagtgtttgaatctcagc 311  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| || |||| |||||||||||  ||||||||||||||    
T  40404187 tgtactcataaaccaaaagatttgtctcatggtttgagcagaaacccaataatctaacaatgtgtctgtgtcgaattctccccaaagtttgaatctcagc 40404286  T
Q  312 attgaatccatgatcatgagaagagcctctgctcataaccggaagccttttaacagcaacaagttccccattcggcattgcccctttgtagacaatgccc 411  Q
    |||||| ||||||||||| ||||||||||| |||||| |||| | |||||| ||||||||||| || ||||| ||||| || |||||||| ||||||||     
T  40404287 attgaaaccatgatcatgtgaagagcctctactcatagccggtaaccttttcacagcaacaagatcaccattaggcatagcacctttgtaaacaatgcca 40404386  T
Q  412 gcacctccttttccgatgatgt 433  Q
    ||||| |||||||| |||||||    
T  40404387 gcaccaccttttcctatgatgt 40404408  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 79 - 221
Target Start/End: Complemental strand, 26735974 - 26735832
Alignment:
Q  79 ataagcggggaacaatcatggtgtagatagcaaagtccctttgcagcctccacagcaattttataccttgtatcccaatacaaatgaccgcctttctttc 178  Q
    ||||| || |||||||||||||| | ||||||||||||||| ||||| |||||||||||||| |||||  | ||||||  ||||||||  |||||    |    
T  26735974 ataagaggtgaacaatcatggtgcaaatagcaaagtcccttagcagcttccacagcaattttgtacctcatttcccaactcaaatgacaaccttttgcac 26735875  T
Q  179 catggagaacttcgcctaaacttccattaggcatgtactcata 221  Q
    |||| ||    || |||||||| ||||||||||||||||||||    
T  26735874 catgaagccactcacctaaactaccattaggcatgtactcata 26735832  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 12062600 - 12062721
Alignment:
Q  25 gcttcataattagaatcaagaaggatgttgtttgatttcacatctcgatgaacaataagcggggaacaatcatggtgtagatagcaaagtccctttgcag 124  Q
    ||||||||||| | |||||| |  |||||| ||||||| | ||| | ||||| || | | || |||||||||||||| | |||||||| ||| ||||||     
T  12062600 gcttcataatttgcatcaagcaaaatgttgcttgattttatatccctatgaataacaggtggtgaacaatcatggtgcaaatagcaaattccttttgcac 12062699  T
Q  125 cctccacagcaattttatacct 146  Q
    |  ||| |||||||||||||||    
T  12062700 ctcccaaagcaattttatacct 12062721  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 15041449 - 15041405
Alignment:
Q  66 atctcgatgaacaataagcggggaacaatcatggtgtagatagca 110  Q
    |||||||||||||||| | |||||||||||||| |||||||||||    
T  15041449 atctcgatgaacaataggaggggaacaatcatgatgtagatagca 15041405  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 15002969 - 15002925
Alignment:
Q  66 atctcgatgaacaataagcggggaacaatcatggtgtagatagca 110  Q
    |||||||||||||||| | |||||||||||||| || ||||||||    
T  15002969 atctcgatgaacaataggaggggaacaatcatgatgcagatagca 15002925  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 15037881 - 15037837
Alignment:
Q  66 atctcgatgaacaataagcggggaacaatcatggtgtagatagca 110  Q
    |||||||||||||||| | |||||||||||||| || ||||||||    
T  15037881 atctcgatgaacaataggaggggaacaatcatgatgcagatagca 15037837  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 21151470 - 21151434
Alignment:
Q  194 ctaaacttccattaggcatgtactcataaaccaaaag 230  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  21151470 ctaaacttccatttggcatgtaatcataaaccaaaag 21151434  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 22804580 - 22804616
Alignment:
Q  194 ctaaacttccattaggcatgtactcataaaccaaaag 230  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  22804580 ctaaacttccattcggcatgtaatcataaaccaaaag 22804616  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 22808864 - 22808900
Alignment:
Q  194 ctaaacttccattaggcatgtactcataaaccaaaag 230  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  22808864 ctaaacttccatttggcatgtaatcataaaccaaaag 22808900  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 22814271 - 22814307
Alignment:
Q  194 ctaaacttccattaggcatgtactcataaaccaaaag 230  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  22814271 ctaaacttccattcggcatgtaatcataaaccaaaag 22814307  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 22830275 - 22830311
Alignment:
Q  194 ctaaacttccattaggcatgtactcataaaccaaaag 230  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  22830275 ctaaacttccattcggcatgtaatcataaaccaaaag 22830311  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 22839296 - 22839332
Alignment:
Q  194 ctaaacttccattaggcatgtactcataaaccaaaag 230  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  22839296 ctaaacttccattcggcatgtaatcataaaccaaaag 22839332  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 22875172 - 22875208
Alignment:
Q  194 ctaaacttccattaggcatgtactcataaaccaaaag 230  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  22875172 ctaaacttccatttggcatgtaatcataaaccaaaag 22875208  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 22879836 - 22879872
Alignment:
Q  194 ctaaacttccattaggcatgtactcataaaccaaaag 230  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  22879836 ctaaacttccatttggcatgtaatcataaaccaaaag 22879872  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 22888542 - 22888578
Alignment:
Q  194 ctaaacttccattaggcatgtactcataaaccaaaag 230  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  22888542 ctaaacttccattcggcatgtaatcataaaccaaaag 22888578  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 22893197 - 22893233
Alignment:
Q  194 ctaaacttccattaggcatgtactcataaaccaaaag 230  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  22893197 ctaaacttccattcggcatgtaatcataaaccaaaag 22893233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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