View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13105_low_9 (Length: 396)
Name: NF13105_low_9
Description: NF13105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13105_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 10 - 303
Target Start/End: Complemental strand, 183248 - 182955
Alignment:
| Q |
10 |
catcatcaatgagagaataagtgttgtcaaccatacccaactactctatagtcttcaccattaatacacaaccctcataattttcttagagaattaagta |
109 |
Q |
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| T |
183248 |
catcatcaatgagagaataagtgttgtcaaccatacccaactactctatagtcttcaccattaatacacaaccctcataattttcttagagaattaagta |
183149 |
T |
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| Q |
110 |
ctacttgacaaaacataaatccaaattagtctctataatacaatgatttatggactaatttatcccgaatatgaaaatgtcatagattaatttgtgtttt |
209 |
Q |
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| T |
183148 |
ctacttgacaaaacataaatccaaattagtctctataatacaatgatttatggactaatttatcccgaatatgaaaatgtcatagattaatttgtgtttt |
183049 |
T |
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| Q |
210 |
atttattgttagagactgaattaaattgtatcttcactcattaatcaaatagatagtttgttaggattgcatacttttatatgaactgattggc |
303 |
Q |
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| T |
183048 |
atttattgttagagactgaattaaattgtatcttcactcattaatcaaatagatagtttgttaggattgcatacttttatatgaactgattggc |
182955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 293 - 381
Target Start/End: Original strand, 185581 - 185669
Alignment:
| Q |
293 |
aactgattggcaaaaagaggtttgttttctcatacaaatatctaaaccttttccaaattgtgcacttttttcttttcaaccacatttgt |
381 |
Q |
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| T |
185581 |
aactgattggcaaaaagaggtttgttttctcatacaaatatctaaaccttttccaaattgtgcacttttttcttttcaaccacatttgt |
185669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 174
Target Start/End: Original strand, 15962607 - 15962650
Alignment:
| Q |
131 |
caaattagtctctataatacaatgatttatggactaatttatcc |
174 |
Q |
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| T |
15962607 |
caaattagtctctctaatacaatgagttaaggactaatttatcc |
15962650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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