View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13106_high_4 (Length: 364)
Name: NF13106_high_4
Description: NF13106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13106_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 182 - 356
Target Start/End: Original strand, 45246679 - 45246853
Alignment:
| Q |
182 |
attttcttgctaaatggaagaacatttccaaggtcatgacgaattagtgctcccaaaaactgtacagcggtgaatttgatcctaagatatacaaatatat |
281 |
Q |
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| T |
45246679 |
attttcttgctaaatggaagaacatttccaaggtcatgacgaattagtgctcccaaaaactgtacagcagtgaatttgatcctaagatatacaaatatat |
45246778 |
T |
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| Q |
282 |
gaatccccgttgtagatgattatacaacaacaactttatgcaaatgaaataccaaaaaatatgagaaacacaagg |
356 |
Q |
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| T |
45246779 |
gaatccccgttgtagatgattatacaacaacaactttatgcaaatgaaataccaaaaaatatgagaaacacaagg |
45246853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 45246511 - 45246618
Alignment:
| Q |
14 |
agatttaatagaacgaagtgtaagcatgatcacatttaagacaataatacaaattttatgatttggttcaacagacaagacttgtgaaactgcataccaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45246511 |
agatttaatagaacgaagtgtaagcatgatcacatttaagacaataatacaaattttatgatttggttcaacagacaagacttgtgaaactgcataccaa |
45246610 |
T |
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| Q |
114 |
ggctttag |
121 |
Q |
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| T |
45246611 |
ggctttag |
45246618 |
T |
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