View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13106_high_5 (Length: 349)
Name: NF13106_high_5
Description: NF13106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13106_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 45246892 - 45247221
Alignment:
| Q |
1 |
cctaaatcattttttatctcattataggatggcaaaatcaaatgaaactgattatttgctcctgaataataaatccattgaaagtccaatagttgatggc |
100 |
Q |
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| T |
45246892 |
cctaaatcattttttatctcattataggatggcaaaatcaaatgaaactgattatttgctcctgaataataaatccattgaaagtccaatagttgatggc |
45246991 |
T |
|
| Q |
101 |
ttaaatggacgcataaatttccatgatgaagccatctgagactcttcnnnnnnnnnnnnngtacctttgtgaagtcctgtaccatcatggcttctagtag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45246992 |
ttaaatggacgcataaatttccatgatgaagccatctgagactcttcttttttagtttttgtacctttgtgaagtcctgtaccatcatggcttctagtag |
45247091 |
T |
|
| Q |
201 |
gtccagatggttttacattgaatgtccctgaactaaaggatgtgtccgaggcaccaaatgaaacaggtcctttacttgattcatcttgtggatatccaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45247092 |
gtccagatggttttacattgaatgtccctgaactaaaggatgtgtccgaggcaccaaacgaaacaggtcctttacttgattcatcttgtggatatccaac |
45247191 |
T |
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| Q |
301 |
agctccatcttgatgaggtggtggaaattt |
330 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
45247192 |
agctccatcttgatgaggtggtggaaattt |
45247221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 330
Target Start/End: Original strand, 40355769 - 40355845
Alignment:
| Q |
254 |
ccaaatgaaacaggtcctttacttgattcatcttgtggatatccaacagctccatcttgatgaggtggtggaaattt |
330 |
Q |
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||||||||||||| ||||||| ||||| |||| ||||||||| ||||||||||||| |||||| ||||||||||| |
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| T |
40355769 |
ccaaatgaaacagctcctttatttgatccatcccctggatatcctacagctccatcttcatgaggaggtggaaattt |
40355845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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