View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13106_high_8 (Length: 236)

Name: NF13106_high_8
Description: NF13106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13106_high_8
NF13106_high_8
[»] chr8 (2 HSPs)
chr8 (1-134)||(40503571-40503703)
chr8 (44-136)||(1084785-1084876)
[»] chr1 (1 HSPs)
chr1 (1-134)||(24706798-24706930)
[»] chr2 (2 HSPs)
chr2 (1-134)||(11354889-11355021)
chr2 (73-154)||(11352433-11352514)
[»] chr6 (1 HSPs)
chr6 (1-118)||(15343253-15343369)
[»] scaffold0186 (1 HSPs)
scaffold0186 (20-159)||(26666-26804)
[»] chr3 (2 HSPs)
chr3 (44-158)||(24997778-24997891)
chr3 (1-83)||(25009964-25010045)
[»] chr5 (1 HSPs)
chr5 (78-160)||(23109377-23109459)


Alignment Details
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 40503571 - 40503703
Alignment:
Q  1 atccacctaaattatgtaaaaggaatacatttgggcaagctagtgaatcttgactgatgagcatggtgagagaggtgaactattgttcatctttaacaga 100  Q
    ||||||||||||||||| ||||||||| ||||||| || ||||  |||||||||| |||||||||| | ||||||||||||||||||||||||||||||     
T  40503571 atccacctaaattatgtgaaaggaatatatttgggaaaactagataatcttgactaatgagcatgg-gtgagaggtgaactattgttcatctttaacagg 40503669  T
Q  101 cttcacaaaaactaaccaaaattgagaaagactt 134  Q
    ||||||||||||||||||||||||||||||||||    
T  40503670 cttcacaaaaactaaccaaaattgagaaagactt 40503703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 1084876 - 1084785
Alignment:
Q  44 tgaatcttgactgatgagcatggtgagagaggtgaactattgttcatctttaacagacttcacaaaaactaaccaaaattgagaaagacttaa 136  Q
    ||||||||| ||||||||||||  | || |||||||||||||| ||||||| ||||||||   |||| |||||||||||  ||| ||||||||    
T  1084876 tgaatcttgtctgatgagcatga-gtgaaaggtgaactattgtccatctttgacagacttttgaaaatctaaccaaaataaagatagacttaa 1084785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 24706930 - 24706798
Alignment:
Q  1 atccacctaaattatgtaaaaggaatacatttgggcaagctagtgaatcttgactgatgagcatggtgagagaggtgaactattgttcatctttaacaga 100  Q
    ||||||||||||||||| ||||||||| ||||||| || ||||  |||||||||| |||||||||| | ||||||||||||||||||||||||||||||     
T  24706930 atccacctaaattatgtgaaaggaatagatttgggaaaactagataatcttgactaatgagcatgg-gtgagaggtgaactattgttcatctttaacagg 24706832  T
Q  101 cttcacaaaaactaaccaaaattgagaaagactt 134  Q
    ||||||||||||||||||||||||||||||||||    
T  24706831 cttcacaaaaactaaccaaaattgagaaagactt 24706798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 11355021 - 11354889
Alignment:
Q  1 atccacctaaattatgtaaaaggaatacatttgggcaagctagtgaatcttgactgatgagcatggtgagagaggtgaactattgttcatctttaacaga 100  Q
    ||||||||||||||||| ||||||||||||||||| ||  |||  |||||||||| |||||||||| | ||||||||||||||||||||||||||||||     
T  11355021 atccacctaaattatgtgaaaggaatacatttgggtaaattagataatcttgactaatgagcatgg-gtgagaggtgaactattgttcatctttaacagg 11354923  T
Q  101 cttcacaaaaactaaccaaaattgagaaagactt 134  Q
    |||| |||||||||||||||||||||||| ||||    
T  11354922 cttcgcaaaaactaaccaaaattgagaaatactt 11354889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 11352433 - 11352514
Alignment:
Q  73 aggtgaactattgttcatctttaacagacttcacaaaaactaaccaaaattgagaaagacttaaccatgttttatcaaaggt 154  Q
    |||||||||||||| ||||||| ||||| ||   |||| |||||||||||  ||| ||||||||||||||||||||||||||    
T  11352433 aggtgaactattgtgcatctttgacagaattttgaaaacctaaccaaaataaagatagacttaaccatgttttatcaaaggt 11352514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 15343253 - 15343369
Alignment:
Q  1 atccacctaaattatgtaaaaggaatacatttgggcaagctagtgaatcttgactgatgagcatggtgagagaggtgaactattgttcatctttaacaga 100  Q
    ||||||||||||||||| ||||||||||||||||| || ||||  |||||||||| |||||||||| | ||||||||||||||||||||||||||||||     
T  15343253 atccacctaaattatgtgaaaggaatacatttgggaaaactagataatcttgactaatgagcatgg-gtgagaggtgaactattgttcatctttaacagg 15343351  T
Q  101 cttcacaaaaactaacca 118  Q
    ||||||||||||||||||    
T  15343352 cttcacaaaaactaacca 15343369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 26666 - 26804
Alignment:
Q  20 aaggaatacatttgggcaagctagtgaatcttgactgatgagcatggtgagagaggtgaactattgttcatctttaacagacttcacaaaaactaaccaa 119  Q
    |||||||||||||||| |  | ||||||||||||||||||||||||  | || ||||||| |||| |  |||||| | ||||||    ||||||||||||    
T  26666 aaggaatacatttgggtacaccagtgaatcttgactgatgagcatgagg-gaaaggtgaattattttctatctttgaaagacttttggaaaactaaccaa 26764  T
Q  120 aattgagaaagacttaaccatgttttatcaaaggtgtaac 159  Q
    ||||  || |||||||||||| ||||||||||||||||||    
T  26765 aattaggatagacttaaccatattttatcaaaggtgtaac 26804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 158
Target Start/End: Original strand, 24997778 - 24997891
Alignment:
Q  44 tgaatcttgactgatgagcatggtgagagaggtgaactattgttcatctttaacagacttcacaaaaactaaccaaaattgagaaagacttaaccatgtt 143  Q
    ||||||||| ||||||||||||  | || ||||||||| |||| ||||||| ||||| ||   |||| |||||||||||  ||| |||||||||||||||    
T  24997778 tgaatcttgtctgatgagcatga-gtgaaaggtgaacttttgtccatctttgacagaattttgaaaacctaaccaaaataaagatagacttaaccatgtt 24997876  T
Q  144 ttatcaaaggtgtaa 158  Q
    |||||||||||||||    
T  24997877 ttatcaaaggtgtaa 24997891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 25010045 - 25009964
Alignment:
Q  1 atccacctaaattatgtaaaaggaatacatttgggcaagctagtgaatcttgactgatgagcatggtgagagaggtgaactat 83  Q
    ||||||||||||| ||| |||| |||||||||||| || ||||  |||||||||| |||||||||| | ||||||||||||||    
T  25010045 atccacctaaattctgtgaaagaaatacatttgggaaaactagataatcttgactaatgagcatgg-gtgagaggtgaactat 25009964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 160
Target Start/End: Complemental strand, 23109459 - 23109377
Alignment:
Q  78 aactattgttcatctttaacagacttcacaaaaactaaccaaaattgagaaagacttaaccatgttttatcaaaggtgtaacc 160  Q
    ||||||| | ||||||| |||| ||| | |||| |||||||||| ||||| |||||||| ||||||||||||||||| |||||    
T  23109459 aactattatccatcttttacaggctttagaaaatctaaccaaaactgagatagacttaatcatgttttatcaaaggtataacc 23109377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University