View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13106_low_2 (Length: 508)

Name: NF13106_low_2
Description: NF13106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13106_low_2
NF13106_low_2
[»] chr8 (13 HSPs)
chr8 (54-182)||(11762591-11762719)
chr8 (332-490)||(11762867-11763014)
chr8 (377-489)||(30711942-30712054)
chr8 (377-489)||(30719719-30719831)
chr8 (377-489)||(20386655-20386767)
chr8 (421-489)||(20385659-20385727)
chr8 (421-489)||(30710946-30711014)
chr8 (421-489)||(4405929-4405997)
chr8 (450-490)||(11761930-11761970)
chr8 (419-489)||(8747531-8747601)
chr8 (383-489)||(28339191-28339296)
chr8 (440-489)||(2534786-2534835)
chr8 (421-489)||(16388795-16388863)
[»] chr3 (13 HSPs)
chr3 (349-490)||(25107303-25107444)
chr3 (332-490)||(25108275-25108433)
chr3 (349-489)||(33156191-33156331)
chr3 (450-490)||(23276281-23276321)
chr3 (423-482)||(23272921-23272980)
chr3 (421-489)||(9367832-9367900)
chr3 (143-178)||(29192760-29192795)
chr3 (424-489)||(23458251-23458316)
chr3 (145-178)||(25108106-25108139)
chr3 (421-489)||(9294227-9294295)
chr3 (433-489)||(20704608-20704664)
chr3 (421-489)||(26463867-26463935)
chr3 (421-489)||(33689648-33689716)
[»] chr4 (9 HSPs)
chr4 (349-489)||(16605693-16605833)
chr4 (421-490)||(56014815-56014884)
chr4 (419-490)||(56015914-56015985)
chr4 (451-491)||(41582536-41582576)
chr4 (393-489)||(48528563-48528659)
chr4 (451-491)||(40388405-40388445)
chr4 (423-489)||(54434280-54434346)
chr4 (450-491)||(41583529-41583570)
chr4 (421-489)||(14801827-14801895)
[»] chr5 (8 HSPs)
chr5 (349-434)||(42066805-42066890)
chr5 (332-489)||(42067701-42067861)
chr5 (394-489)||(14848948-14849044)
chr5 (422-490)||(5256282-5256350)
chr5 (143-178)||(42067537-42067572)
chr5 (421-489)||(13962955-13963023)
chr5 (450-490)||(42063344-42063384)
chr5 (421-489)||(38442159-38442227)
[»] chr7 (8 HSPs)
chr7 (419-489)||(5457174-5457244)
chr7 (427-489)||(11397469-11397531)
chr7 (419-489)||(45915747-45915817)
chr7 (421-489)||(20426599-20426667)
chr7 (419-489)||(18670130-18670200)
chr7 (424-489)||(3914229-3914294)
chr7 (419-488)||(43123267-43123336)
chr7 (421-489)||(32053412-32053480)
[»] chr1 (11 HSPs)
chr1 (351-489)||(44523335-44523473)
chr1 (393-489)||(34850306-34850402)
chr1 (89-140)||(47172355-47172406)
chr1 (421-489)||(4960631-4960699)
chr1 (421-489)||(24009810-24009878)
chr1 (377-489)||(40439415-40439526)
chr1 (422-489)||(25065900-25065967)
chr1 (433-488)||(31197152-31197207)
chr1 (450-489)||(42534313-42534352)
chr1 (421-489)||(14879062-14879130)
chr1 (421-489)||(17662119-17662187)
[»] chr6 (8 HSPs)
chr6 (377-489)||(679957-680069)
chr6 (433-489)||(26463270-26463326)
chr6 (428-489)||(12408447-12408508)
chr6 (421-489)||(680997-681065)
chr6 (425-489)||(28498298-28498362)
chr6 (425-489)||(29810709-29810773)
chr6 (425-489)||(141013-141077)
chr6 (425-489)||(149034-149098)
[»] scaffold0008 (1 HSPs)
scaffold0008 (414-489)||(239813-239888)
[»] scaffold0347 (1 HSPs)
scaffold0347 (422-489)||(14535-14602)
[»] chr2 (4 HSPs)
chr2 (424-489)||(11349477-11349542)
chr2 (421-489)||(44044205-44044273)
chr2 (450-489)||(44045300-44045339)
chr2 (432-489)||(10840567-10840624)
[»] scaffold0220 (1 HSPs)
scaffold0220 (423-489)||(24617-24683)
[»] scaffold0005 (1 HSPs)
scaffold0005 (421-489)||(37832-37900)


Alignment Details
Target: chr8 (Bit Score: 113; Significance: 5e-57; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 54 - 182
Target Start/End: Original strand, 11762591 - 11762719
Alignment:
Q  54 gttattctaacagtgattgacttgtttttagtgttgttgttgagagtaatttggtggttgaggttgaaaaggtgaagaatgttatgatccggattggaat 153  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||    
T  11762591 gttattctaacagtgatcgacttgtttttagtgttgttgttgagagtaattcggtggttgtggttgaaaaagtgaagaatgttatgatccggattggaat 11762690  T
Q  154 cggaattggaaattgaaaacatacaggtt 182  Q
    |||||||||||||||||||||||||||||    
T  11762691 cggaattggaaattgaaaacatacaggtt 11762719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 332 - 490
Target Start/End: Original strand, 11762867 - 11763014
Alignment:
Q  332 tggtataagggtaaatccgtcattttaccgcgctgtgatagaaggaggggcattttcatctgttcaagccaagctttgctgggtcagactgccacgtcag 431  Q
    |||||||||||||||||||||||||| || |||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  11762867 tggtataagggtaaatccgtcattttgccacgctgtgatagaaggaagggcattttcgtctgttcaaaccaagctttgctgggtcagactgccacgtcag 11762966  T
Q  432 ctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaac 490  Q
    |||||||           |||||||||||||||||||| ||||||||||||||||||||    
T  11762967 ctaatca-----------gtgattaactgtgatgaggggcgaaattttaaatgattaac 11763014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 377 - 489
Target Start/End: Original strand, 30711942 - 30712054
Alignment:
Q  377 aggggcattttcatctgttcaagccaagctttgctgggtcagactgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaat 476  Q
    ||||| |||||| ||||||||||||||  | || || ||||||||||||||||||||||||||||||||| | || |||||||| | | |||||||||||    
T  30711942 aggggtattttcgtctgttcaagccaaaatatgttgagtcagactgccacgtcagctaatcagtgatgtggcagtaattaactgggttcagggacgaaat 30712041  T
Q  477 tttaaatgattaa 489  Q
    |||||||||||||    
T  30712042 tttaaatgattaa 30712054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 377 - 489
Target Start/End: Original strand, 30719719 - 30719831
Alignment:
Q  377 aggggcattttcatctgttcaagccaagctttgctgggtcagactgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaat 476  Q
    ||||| |||||| ||||||||||||||  | || || ||||||||||||||||||||||||||||||||| | || |||||||| | | |||||||||||    
T  30719719 aggggtattttcgtctgttcaagccaaaatatgttgagtcagactgccacgtcagctaatcagtgatgtggcagtaattaactgggttcagggacgaaat 30719818  T
Q  477 tttaaatgattaa 489  Q
    |||||||||||||    
T  30719819 tttaaatgattaa 30719831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 377 - 489
Target Start/End: Original strand, 20386655 - 20386767
Alignment:
Q  377 aggggcattttcatctgttcaagccaagctttgctgggtcagactgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaat 476  Q
    ||||| |||||| ||||||||||||||  | || || ||||||||||||||||||||||||||||||||| | ||  ||||||| | | |||||||||||    
T  20386655 aggggtattttcgtctgttcaagccaaaatatgttgagtcagactgccacgtcagctaatcagtgatgtggcagtagttaactgggctcagggacgaaat 20386754  T
Q  477 tttaaatgattaa 489  Q
    |||||||||||||    
T  20386755 tttaaatgattaa 20386767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 421 - 489
Target Start/End: Complemental strand, 20385727 - 20385659
Alignment:
Q  421 tgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||||||||||||||| ||| | || |||||||| | | ||||||||||||||||||||||||    
T  20385727 tgccacgtcagctaatcagtgacgtggcagtaattaactgggctcagggacgaaattttaaatgattaa 20385659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 421 - 489
Target Start/End: Complemental strand, 30711014 - 30710946
Alignment:
Q  421 tgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||| ||||||||||| ||||| || |||||||| | | ||||||||||||||||||||||||    
T  30711014 tgccacgtcaactaatcagtgacgtgacagtaattaactgggctcagggacgaaattttaaatgattaa 30710946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 489
Target Start/End: Original strand, 4405929 - 4405997
Alignment:
Q  421 tgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||  | ||| ||||| ||||| |||||||| || || |||||||||||||||||||||||||    
T  4405929 tgccacgtcttcaaattagtgacgtgacagtgattaagtgggaagagggacgaaattttaaatgattaa 4405997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 490
Target Start/End: Complemental strand, 11761970 - 11761930
Alignment:
Q  450 gtgattaactgtgatgagggacgaaattttaaatgattaac 490  Q
    ||||||||| ||||||||| |||||||||||||||||||||    
T  11761970 gtgattaacagtgatgaggtacgaaattttaaatgattaac 11761930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 489
Target Start/End: Original strand, 8747531 - 8747601
Alignment:
Q  419 actgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||||| | ||| | ||| ||| |||||||||| || | | ||||||||||||||||||||||||    
T  8747531 actgccacgtcatcaaattactgacgtggcggtgattaagtgggttaagggacgaaattttaaatgattaa 8747601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 489
Target Start/End: Original strand, 28339191 - 28339296
Alignment:
Q  383 attttcatctgttcaagccaagctttgctgggtcagactgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaa 482  Q
    |||||| |||||||| |||||  |||| || ||||||||||||| ||| |||  |||||| ||||  || |||||||| | |||||||| || |||||||    
T  28339191 attttcgtctgttcacgccaaaatttgttgagtcagactgccacttcaactag-cagtgacgtgatagtaattaactgggttgagggaccaatttttaaa 28339289  T
Q  483 tgattaa 489  Q
    |||||||    
T  28339290 tgattaa 28339296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 489
Target Start/End: Complemental strand, 2534835 - 2534786
Alignment:
Q  440 tgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    ||||||| | ||||||||||| ||  ||||||||||||||||||||||||    
T  2534835 tgatgtggcagtgattaactgggaatagggacgaaattttaaatgattaa 2534786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 489
Target Start/End: Original strand, 16388795 - 16388863
Alignment:
Q  421 tgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||| | ||| ||||| ||| | |||||||| || |  |||||||||||||||||||||||||    
T  16388795 tgccacgtcatcaaattagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 16388863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 3e-43; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 349 - 490
Target Start/End: Complemental strand, 25107444 - 25107303
Alignment:
Q  349 cgtcattttaccgcgctgtgatagaaggaggggcattttcatctgttcaagccaagctttgctgggtcagactgccacgtcagctaatcagtgatgtgac 448  Q
    ||||||||| || |||||||||||||||| |||||||||| ||||||||||||||  |||| ||||| ||||| |||||||||||||||| ||| ||| |    
T  25107444 cgtcattttgccacgctgtgatagaaggaagggcattttcgtctgttcaagccaaaatttgttgggttagactaccacgtcagctaatcactgacgtggc 25107345  T
Q  449 ggtgattaactgtgatgagggacgaaattttaaatgattaac 490  Q
     |||||||||||||||||||||||||||||||||||||||||    
T  25107344 agtgattaactgtgatgagggacgaaattttaaatgattaac 25107303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 332 - 490
Target Start/End: Original strand, 25108275 - 25108433
Alignment:
Q  332 tggtataagggtaaatccgtcattttaccgcgctgtgatagaaggaggggcattttcatctgttcaagccaagctttgctgggtcagactgccacgtcag 431  Q
    ||||||||||||||||  |||||||  | || || ||||  ||||||||| |||||  ||  |||| |||||||||||||| |||| | |||||||||||    
T  25108275 tggtataagggtaaatatgtcatttcgctgccctctgatgaaaggaggggtatttttgtcacttcatgccaagctttgctgagtcaaagtgccacgtcag 25108374  T
Q  432 ctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaac 490  Q
    ||||||||||| ||| | ||||||||||||||||| |||||||||||||||||||||||    
T  25108375 ctaatcagtgacgtggcagtgattaactgtgatgaaggacgaaattttaaatgattaac 25108433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 349 - 489
Target Start/End: Original strand, 33156191 - 33156331
Alignment:
Q  349 cgtcattttaccgcgctgtgatagaaggaggggcattttcatctgttcaagccaagctttgctgggtcagactgccacgtcagctaatcagtgatgtgac 448  Q
    ||||||||| |||| || ||||||||||| |||||||||| ||| |||||||||| |||||||| ||||   |||||||||||||||| ||||| ||| |    
T  33156191 cgtcattttgccgcactttgatagaaggaagggcattttcgtctcttcaagccaaactttgctgagtcaatatgccacgtcagctaattagtgacgtggc 33156290  T
Q  449 ggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
     |||||||| || |  |||||||||||||||||||||||||    
T  33156291 agtgattaagtggggggagggacgaaattttaaatgattaa 33156331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 490
Target Start/End: Original strand, 23276281 - 23276321
Alignment:
Q  450 gtgattaactgtgatgagggacgaaattttaaatgattaac 490  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  23276281 gtgattaactgtgatgagggacaaaattttaaatgattaac 23276321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 423 - 482
Target Start/End: Complemental strand, 23272980 - 23272921
Alignment:
Q  423 ccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaa 482  Q
    |||||||| | ||||||||| ||| | ||||||||||||||||||||||||||| |||||    
T  23272980 ccacgtcatcaaatcagtgacgtggcagtgattaactgtgatgagggacgaaatgttaaa 23272921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 489
Target Start/End: Complemental strand, 9367900 - 9367832
Alignment:
Q  421 tgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||| ||| | ||| ||||| ||| | |||||||| || ||||||||||||||||||||||||||||    
T  9367900 tgccacctcatcaaattagtgacgtggcagtgattaattgggatgagggacgaaattttaaatgattaa 9367832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 178
Target Start/End: Original strand, 29192760 - 29192795
Alignment:
Q  143 cggattggaatcggaattggaaattgaaaacataca 178  Q
    |||||||||||| |||||||||||||||||||||||    
T  29192760 cggattggaatcagaattggaaattgaaaacataca 29192795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 489
Target Start/End: Original strand, 23458251 - 23458316
Alignment:
Q  424 cacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    ||||||| | ||| ||||||||| | |||||||| || |  |||||||||||||||||||||||||    
T  23458251 cacgtcatcaaattagtgatgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 23458316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 178
Target Start/End: Original strand, 25108106 - 25108139
Alignment:
Q  145 gattggaatcggaattggaaattgaaaacataca 178  Q
    |||||||||| |||||||||||||||||||||||    
T  25108106 gattggaatctgaattggaaattgaaaacataca 25108139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 489
Target Start/End: Original strand, 9294227 - 9294295
Alignment:
Q  421 tgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||| | ||| |||||  |||| |||||||| || |  |||||||||||||||||||||||||    
T  9294227 tgccacgtcatcaaattagtgacatgacagtgattaagtggggagagggacgaaattttaaatgattaa 9294295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 489
Target Start/End: Original strand, 20704608 - 20704664
Alignment:
Q  433 taatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||| ||||| ||||| |||||||| || || ||||||||||||||||| |||||||    
T  20704608 taattagtgacgtgactgtgattaagtgggaagagggacgaaattttaagtgattaa 20704664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 489
Target Start/End: Original strand, 26463867 - 26463935
Alignment:
Q  421 tgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    ||||| |||| | ||| ||||| ||||| |||||||| || |  |||||||||||||||||||||||||    
T  26463867 tgccatgtcatcaaattagtgacgtgacagtgattaagtggggagagggacgaaattttaaatgattaa 26463935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 489
Target Start/End: Original strand, 33689648 - 33689716
Alignment:
Q  421 tgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||| | ||| ||||| ||| | |||||||| || |  |||||||||||||||||||||||||    
T  33689648 tgccacgtcatcgaattagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 33689716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 349 - 489
Target Start/End: Complemental strand, 16605833 - 16605693
Alignment:
Q  349 cgtcattttaccgcgctgtgatagaaggaggggcattttcatctgttcaagccaagctttgctgggtcagactgccacgtcagctaatcagtgatgtgac 448  Q
    ||||||||| |||| || |||||||||||  ||||||||| ||| |||||||||| |||||||| ||||   |||||||||||||||| ||||| ||| |    
T  16605833 cgtcatttttccgcactttgatagaaggaaaggcattttcgtctcttcaagccaaactttgctgagtcaatgtgccacgtcagctaattagtgacgtggc 16605734  T
Q  449 ggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
     |||||||| || |  |||||||||||||||||||||||||    
T  16605733 agtgattaagtggggggagggacgaaattttaaatgattaa 16605693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 421 - 490
Target Start/End: Complemental strand, 56014884 - 56014815
Alignment:
Q  421 tgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaac 490  Q
    |||||||||| | ||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||    
T  56014884 tgccacgtcatcaaatcagtgacgtggcagtgattaactgtgatgagggacgaaattttaaatgattaac 56014815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 419 - 490
Target Start/End: Original strand, 56015914 - 56015985
Alignment:
Q  419 actgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaac 490  Q
    |||| ||||||| | ||||||||| ||| | ||||||||||||||||| |||||||||||||||||||||||    
T  56015914 actgtcacgtcatcaaatcagtgacgtggcagtgattaactgtgatgaaggacgaaattttaaatgattaac 56015985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 451 - 491
Target Start/End: Complemental strand, 41582576 - 41582536
Alignment:
Q  451 tgattaactgtgatgagggacgaaattttaaatgattaact 491  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  41582576 tgattaactgtgatgagggacgaaattttaaatgattaact 41582536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 393 - 489
Target Start/End: Complemental strand, 48528659 - 48528563
Alignment:
Q  393 gttcaagccaagctttgctgggtcagactgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||||  |||| ||  | |||||| ||||||||||||||||||||||||| |||||||| || |   ||| ||||||||||||||||||||    
T  48528659 gttcaagccaaaatttgttgaattagactgtcacgtcagctaatcagtgatgtgacagtgattaagtggggataggaacgaaattttaaatgattaa 48528563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 451 - 491
Target Start/End: Original strand, 40388405 - 40388445
Alignment:
Q  451 tgattaactgtgatgagggacgaaattttaaatgattaact 491  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  40388405 tgattaactgtgatcagggacgaaattttaaatgattaact 40388445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 423 - 489
Target Start/End: Complemental strand, 54434346 - 54434280
Alignment:
Q  423 ccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    ||||||||||| || ||||| ||| | ||||||||||| ||||| ||||| ||||||||||||||||    
T  54434346 ccacgtcagctgattagtgacgtggcagtgattaactgggatgaaggacgtaattttaaatgattaa 54434280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 491
Target Start/End: Original strand, 41583529 - 41583570
Alignment:
Q  450 gtgattaactgtgatgagggacgaaattttaaatgattaact 491  Q
    |||||||| || || |||||||||||||||||||||||||||    
T  41583529 gtgattaagtgagaagagggacgaaattttaaatgattaact 41583570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 489
Target Start/End: Complemental strand, 14801895 - 14801827
Alignment:
Q  421 tgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||| | ||| ||||| ||| | |||||||| || |  |||||||||||||||||||||||||    
T  14801895 tgccacgtcatcaaattagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 14801827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 349 - 434
Target Start/End: Complemental strand, 42066890 - 42066805
Alignment:
Q  349 cgtcattttaccgcgctgtgatagaaggaggggcattttcatctgttcaagccaagctttgctgggtcagactgccacgtcagcta 434  Q
    ||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||  |||| ||||| ||||||||||||||||||    
T  42066890 cgtcattttgccgcgctgtgatagaaggaagggcattttcgtctgttcaagccaaaatttgttgggttagactgccacgtcagcta 42066805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 332 - 489
Target Start/End: Original strand, 42067701 - 42067861
Alignment:
Q  332 tggtataagggtaaatccgtcattttaccgcgctgtgatagaaggaggggcattttcatctgttcaagccaagctttgctgggtcagactgccacgtcag 431  Q
    ||||||||||||||||| |||||||  | || || ||||  ||||||| | |||||  ||  |||| |||||||||||||| |||| | |||||| ||||    
T  42067701 tggtataagggtaaatctgtcatttcgctgccctctgatgaaaggaggtgtatttttgtcacttcatgccaagctttgctgagtcaaagtgccacatcag 42067800  T
Q  432 ctaatcagtgatgtgacggtgattaact---gtgatgagggacgaaattttaaatgattaa 489  Q
    ||||||||||| ||| | ||||||||||    |||||| ||||||||||||||||||||||    
T  42067801 ctaatcagtgacgtggcagtgattaactttgatgatgaaggacgaaattttaaatgattaa 42067861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 394 - 489
Target Start/End: Original strand, 14848948 - 14849044
Alignment:
Q  394 ttcaagccaagctttgctgggtcagactgccacgtcagctaatc-agtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||| ||||| |||||||| |||||  ||||||||||||||||| ||||||||| | |||||||| || | |||||||| |||||||||||||||||    
T  14848948 ttcatgccaaactttgctgagtcagcgtgccacgtcagctaatctagtgatgtggcagtgattaagtggggtgagggaccaaattttaaatgattaa 14849044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 422 - 490
Target Start/End: Original strand, 5256282 - 5256350
Alignment:
Q  422 gccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaac 490  Q
    ||||||||||||||| ||||| ||||||||||||||    |||| ||||||||||||||||||||||||    
T  5256282 gccacgtcagctaattagtgacgtgacggtgattaatgaggatgtgggacgaaattttaaatgattaac 5256350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 143 - 178
Target Start/End: Original strand, 42067537 - 42067572
Alignment:
Q  143 cggattggaatcggaattggaaattgaaaacataca 178  Q
    ||||||||||||||||||||||||||||||||||||    
T  42067537 cggattggaatcggaattggaaattgaaaacataca 42067572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 489
Target Start/End: Complemental strand, 13963023 - 13962955
Alignment:
Q  421 tgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||| | ||| ||||| ||||| |||||||| || |  |||||||||||||||||||||||||    
T  13963023 tgccacgtcatcaaattagtgacgtgacagtgattaagtgaggagagggacgaaattttaaatgattaa 13962955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 490
Target Start/End: Complemental strand, 42063384 - 42063344
Alignment:
Q  450 gtgattaactgtgatgagggacgaaattttaaatgattaac 490  Q
    ||||||| |||||||||||||| ||||||||||||||||||    
T  42063384 gtgattacctgtgatgagggacaaaattttaaatgattaac 42063344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 489
Target Start/End: Complemental strand, 38442227 - 38442159
Alignment:
Q  421 tgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||| | ||| ||| ||||| | |||||||| || |  |||||||||||||||||||||||||    
T  38442227 tgccacgtcatcaaattagttatgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 38442159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 419 - 489
Target Start/End: Original strand, 5457174 - 5457244
Alignment:
Q  419 actgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||||||||||||||||| ||| | ||||||||||| ||||||||||||||||||||||||||||    
T  5457174 actgccacgtcagctaatcagtgacgtggcagtgattaactgggatgagggacgaaattttaaatgattaa 5457244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 489
Target Start/End: Complemental strand, 11397531 - 11397469
Alignment:
Q  427 gtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||| ||||| ||||| |||||||| || |||||| ||| |||||||||||||||||    
T  11397531 gtcagctaattagtgacgtgacagtgattaattgggatgagagactaaattttaaatgattaa 11397469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 419 - 489
Target Start/End: Original strand, 45915747 - 45915817
Alignment:
Q  419 actgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||||||||||||||||| ||| | ||||||||  |  | |||||||| ||||||||||||||||    
T  45915747 actgccacgtcagctaatcagtgacgtggcagtgattaatcggaaagagggacggaattttaaatgattaa 45915817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 489
Target Start/End: Original strand, 20426599 - 20426667
Alignment:
Q  421 tgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    ||||||||||||||||| |||| ||| | ||| || | || |||||||||| |||||||||||||||||    
T  20426599 tgccacgtcagctaatcggtgacgtggcagtggtttagtgggatgagggactaaattttaaatgattaa 20426667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 489
Target Start/End: Original strand, 18670130 - 18670200
Alignment:
Q  419 actgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||||||||||||||||| ||| | || ||||| || | | |||||| ||||||||| |||||||    
T  18670130 actgccacgtcagctaatcagtgacgtggcagtaattaaatgggcttagggaccaaattttaagtgattaa 18670200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 489
Target Start/End: Complemental strand, 3914294 - 3914229
Alignment:
Q  424 cacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    ||||||| | ||| ||||||||| | |||||||| |  || |||||||||||||||||||||||||    
T  3914294 cacgtcatcaaattagtgatgtggcagtgattaagttggaagagggacgaaattttaaatgattaa 3914229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 488
Target Start/End: Complemental strand, 43123336 - 43123267
Alignment:
Q  419 actgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgatta 488  Q
    |||||||||||||||||||||||| ||| | || ||||| || | | |||||| || |||||||||||||    
T  43123336 actgccacgtcagctaatcagtgacgtggcagtcattaattgggctcagggactaatttttaaatgatta 43123267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 489
Target Start/End: Original strand, 32053412 - 32053480
Alignment:
Q  421 tgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    ||||| |||| | ||| ||||| ||||| |||||||| || |  |||||||||||||||||||||||||    
T  32053412 tgccatgtcatcaaattagtgacgtgacagtgattaagtggggagagggacgaaattttaaatgattaa 32053480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 351 - 489
Target Start/End: Original strand, 44523335 - 44523473
Alignment:
Q  351 tcattttaccgcgctgtgatagaaggaggggcattttcatctgttcaagccaagctttgctgggtcagactgccacgtcagctaatcagtgatgtgacgg 450  Q
    ||||||| |||| || ||||||||||| |||||||||| ||| |||||||||| |||||||| ||||   |||||||||||||||| ||||| ||| | |    
T  44523335 tcattttgccgcactttgatagaaggaagggcattttcgtctcttcaagccaaactttgctgagtcaatgtgccacgtcagctaattagtgacgtggcag 44523434  T
Q  451 tgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    ||||||| ||    |||||| ||||||||||||||||||    
T  44523435 tgattaagtgaagggagggatgaaattttaaatgattaa 44523473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 393 - 489
Target Start/End: Original strand, 34850306 - 34850402
Alignment:
Q  393 gttcaagccaagctttgctgggtcagactgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||||  |||| || || |||||||||||||||||||||||||| ||| | |||||||| || |  |||||| ||||||||||||||||||    
T  34850306 gttcaagccaaattttgttgagttagactgccacgtcagctaatcagtgacgtggcagtgattaagtggggagagggatgaaattttaaatgattaa 34850402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 47172406 - 47172355
Alignment:
Q  89 gttgttgagagtaatttggtggttgaggttgaaaaggtgaagaatgttatga 140  Q
    |||||||||| ||||| ||||||||||||||||||||||||| |||||||||    
T  47172406 gttgttgagaataattcggtggttgaggttgaaaaggtgaagcatgttatga 47172355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 489
Target Start/End: Complemental strand, 4960699 - 4960631
Alignment:
Q  421 tgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||| | ||| ||||| ||| | |||||||| || || |||||||||||||||||||||||||    
T  4960699 tgccacgtcatcaaattagtgacgtggcagtgattaagtgggaagagggacgaaattttaaatgattaa 4960631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 489
Target Start/End: Original strand, 24009810 - 24009878
Alignment:
Q  421 tgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||| | ||| ||||||||| | |||||||| || |  |||||||||||||||||||||||||    
T  24009810 tgccacgtcatcaaattagtgatgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 24009878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 489
Target Start/End: Original strand, 40439415 - 40439526
Alignment:
Q  377 aggggcattttcatctgttcaagccaagctttgctgggtcagactgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaat 476  Q
    ||||| |||||| ||||||||||||||  | || |  ||||| |||||| |||||||||||||||| ||| |||| ||||| || | | |||||| || |    
T  40439415 aggggtattttcgtctgttcaagccaaaatctgttaagtcaggctgccatgtcagctaatcagtgacgtgtcggtaattaaatg-ggtcagggaccaatt 40439513  T
Q  477 tttaaatgattaa 489  Q
    |||||||||||||    
T  40439514 tttaaatgattaa 40439526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 489
Target Start/End: Original strand, 25065900 - 25065967
Alignment:
Q  422 gccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    ||||||||||||||||||||| ||| | |||||||| ||    |||||||||||| ||||||||||||    
T  25065900 gccacgtcagctaatcagtgaggtggcagtgattaagtggagagagggacgaaatcttaaatgattaa 25065967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 488
Target Start/End: Complemental strand, 31197207 - 31197152
Alignment:
Q  433 taatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgatta 488  Q
    |||||||||| ||| | ||||||||||  ||||||||| |||||||||||||||||    
T  31197207 taatcagtgacgtggcagtgattaactaggatgagggatgaaattttaaatgatta 31197152  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 489
Target Start/End: Original strand, 42534313 - 42534352
Alignment:
Q  450 gtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    ||||||||||| |||| |||||||||||||||||||||||    
T  42534313 gtgattaactgggatgtgggacgaaattttaaatgattaa 42534352  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 489
Target Start/End: Complemental strand, 14879130 - 14879062
Alignment:
Q  421 tgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||| | ||| |||||  |||| |||||||| || |  |||||||||||||||||||||||||    
T  14879130 tgccacgtcatcaaattagtgacatgacagtgattaagtggggagagggacgaaattttaaatgattaa 14879062  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 489
Target Start/End: Original strand, 17662119 - 17662187
Alignment:
Q  421 tgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||| ||| | ||| ||||| ||| | |||||||| || || |||||||||||||||||||||||||    
T  17662119 tgccacttcatcaaattagtgacgtggcagtgattaagtgggaagagggacgaaattttaaatgattaa 17662187  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 377 - 489
Target Start/End: Complemental strand, 680069 - 679957
Alignment:
Q  377 aggggcattttcatctgttcaagccaagctttgctgggtcagactgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaat 476  Q
    ||||| |||||| | ||||||||||||  | || || ||||||||||||||||||||||||||||||||| | || |||||||| | | | |||||||||    
T  680069 aggggtattttcgtttgttcaagccaaaatatgttgagtcagactgccacgtcagctaatcagtgatgtggcagtaattaactgggctcatggacgaaat 679970  T
Q  477 tttaaatgattaa 489  Q
    |||||||||||||    
T  679969 tttaaatgattaa 679957  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 433 - 489
Target Start/End: Complemental strand, 26463326 - 26463270
Alignment:
Q  433 taatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||| ||| | ||||||||||| ||||||||||||||||||||||||||||    
T  26463326 taatcagtgacgtggcagtgattaactgggatgagggacgaaattttaaatgattaa 26463270  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 428 - 489
Target Start/End: Original strand, 12408447 - 12408508
Alignment:
Q  428 tcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||||||||||||||||| |||||||| | | |||||  |||||||||||||||||    
T  12408447 tcagctaatcagtgatgtgacggtaattaactgggctcagggatcaaattttaaatgattaa 12408508  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 489
Target Start/End: Original strand, 680997 - 681065
Alignment:
Q  421 tgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||||||||||||||| ||| | || |||||||| | | | ||||||||||||||||||||||    
T  680997 tgccacgtcagctaatcagtgacgtggcagtaattaactgggctcatggacgaaattttaaatgattaa 681065  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 425 - 489
Target Start/End: Original strand, 28498298 - 28498362
Alignment:
Q  425 acgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||||||||||| ||| | ||||||||||| | | |||||| |||||||||||||||||    
T  28498298 acgtcagctaatcagtgacgtggcagtgattaactgggctcagggaccaaattttaaatgattaa 28498362  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 425 - 489
Target Start/End: Original strand, 29810709 - 29810773
Alignment:
Q  425 acgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||||||||||| ||| | ||||||||||| | | |||||| |||||||||||||||||    
T  29810709 acgtcagctaatcagtgacgtggcagtgattaactgggctcagggaccaaattttaaatgattaa 29810773  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 489
Target Start/End: Original strand, 141013 - 141077
Alignment:
Q  425 acgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||||||||||| ||||| ||||||   || |||||| || ||||||||||||||||||    
T  141013 acgtcagctaatcagtgacgtgacagtgattggatgagatgagagatgaaattttaaatgattaa 141077  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 489
Target Start/End: Original strand, 149034 - 149098
Alignment:
Q  425 acgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||||||||||| ||||| ||||||   || |||||| || ||||||||||||||||||    
T  149034 acgtcagctaatcagtgacgtgacagtgattggatgagatgagagatgaaattttaaatgattaa 149098  T

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Target: scaffold0008 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 414 - 489
Target Start/End: Original strand, 239813 - 239888
Alignment:
Q  414 gtcagactgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    ||||||||||||||||||||||||||||||||| | || ||||| || |   ||||||||||||||||||||||||    
T  239813 gtcagactgccacgtcagctaatcagtgatgtggcagtaattaagtgggtgtagggacgaaattttaaatgattaa 239888  T

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Target: scaffold0347 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 422 - 489
Target Start/End: Original strand, 14535 - 14602
Alignment:
Q  422 gccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    ||||||||||||||||||||||||| | |||||||| || |  |||||||||||| ||||||||||||    
T  14535 gccacgtcagctaatcagtgatgtggcagtgattaagtggggagagggacgaaatcttaaatgattaa 14602  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 424 - 489
Target Start/End: Original strand, 11349477 - 11349542
Alignment:
Q  424 cacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||||||||  || ||| |  |||||||||| | ||||||||||||||||||||||||||    
T  11349477 cacgtcagctaatcaaagacgtggcactgattaactgggttgagggacgaaattttaaatgattaa 11349542  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 489
Target Start/End: Complemental strand, 44044273 - 44044205
Alignment:
Q  421 tgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    ||||| |||||||||||||||| ||| | || ||||| || | | ||||||||||||||||||||||||    
T  44044273 tgccatgtcagctaatcagtgacgtggcagtaattaattgggctcagggacgaaattttaaatgattaa 44044205  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 489
Target Start/End: Original strand, 44045300 - 44045339
Alignment:
Q  450 gtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    ||||||||||| |||||||||| |||||||||||||||||    
T  44045300 gtgattaactgggatgagggacaaaattttaaatgattaa 44045339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 489
Target Start/End: Complemental strand, 10840624 - 10840567
Alignment:
Q  432 ctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    ||||| ||||| ||||| |||||||| || || ||||||||||| |||||||||||||    
T  10840624 ctaattagtgacgtgacagtgattaagtgggaagagggacgaaagtttaaatgattaa 10840567  T

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Target: scaffold0220 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 489
Target Start/End: Original strand, 24617 - 24683
Alignment:
Q  423 ccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||||||||||||| ||| | || |||||||| | | || ||| |||||||||||||||||    
T  24617 ccacgtcagctaatcagtgacgtggcagtaattaactgggctcagagacaaaattttaaatgattaa 24683  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 489
Target Start/End: Original strand, 37832 - 37900
Alignment:
Q  421 tgccacgtcagctaatcagtgatgtgacggtgattaactgtgatgagggacgaaattttaaatgattaa 489  Q
    |||||||||| | ||| ||||| ||| | |||||||| || |  |||||||||||||||||||||||||    
T  37832 tgccacgtcatcaaattagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaa 37900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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