View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13107_low_1 (Length: 455)
Name: NF13107_low_1
Description: NF13107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13107_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 5562426 - 5562864
Alignment:
| Q |
1 |
acagatcacgtggccattgggcagtatagtttgaaactttgaaatttgagtttgaaaggcaagtcagcatgggtcaaagacacacac----attcatcac |
96 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
5562426 |
acagatcacgtagccattgggcagtatagtttgaaactttgaaatttgagtttgaaaggcaagtcagcatgggtcaaagacacccacccacattcatcac |
5562525 |
T |
|
| Q |
97 |
gtgatcacattgggtatggtcgtggataataagtgaactttttattatcctcggcaggcctaaaattaggtatttcgtggcccataagcatccc-gattt |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5562526 |
gtgatcacattgggtatggtcgtggataataagtgaacttt--attatcctcggcaggcctaaaattaggtatttcgtggcccataagcatccccgattt |
5562623 |
T |
|
| Q |
196 |
atggaaaaagcaagtactctgtttcaaggtcagtgtcctactcttgtcccaaaacgagccaatgtcacctctatctacccc-ctcacgttcagcatgaaa |
294 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5562624 |
atggaaaaagtaagtactctgtttcaaggtcagtgtcctactcttgtcccaaaacgagccaatgtcacctctatctacccccctcacgttcagcatgaaa |
5562723 |
T |
|
| Q |
295 |
acccgcgaaactgagaacaaaacgctaccgttttattttatctagttttattttccataaagctttggttaatttttagggttcattcatcacattgaaa |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5562724 |
acccgcgaaactgagaacaaaacgctaccgttttattttatctagttttattttccataaagcttcggttaatttttagggttcattcatcacattgaaa |
5562823 |
T |
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| Q |
395 |
cggcgcagcagcattgtgaaaactccatggacgacgtaaga |
435 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
5562824 |
cggcgcagcagcattgtgaaaactccatggacgacgtaaga |
5562864 |
T |
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