View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13108_high_10 (Length: 545)
Name: NF13108_high_10
Description: NF13108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13108_high_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 25 - 528
Target Start/End: Complemental strand, 49761366 - 49760862
Alignment:
| Q |
25 |
gataatactcagtttacataaaaaatgaactaattgttaacgaatttcaccaaagaacaaactgttcaaaagaacttaagttcaatttttatgtgaaaca |
124 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
49761366 |
gataatactcagtttacatcaaaaatgaaccaattgttaacgaacttcaccaaagaacaaactgttcaaaagaacttaagttcaatttttgtgtgaaaca |
49761267 |
T |
|
| Q |
125 |
attcttgacgaaactctatttacatcacgactgaactccagattacacatacc-ttttccaccggagataaactacttaaaaattatgtatgcgattgcg |
223 |
Q |
| |
|
||| ||||||||||||| | |||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49761266 |
atttttgacgaaactctgtgtacatcacgactgaactccaaattacacagaccattttccaccggagataaactacttaaaaattatgtatgcgattgcg |
49761167 |
T |
|
| Q |
224 |
atgtgcttattcttaaaataatcgtaaacacttaattccttgggtttgtggcagattctctcttgggaaatatcctagaagatgaggtaagaaagaatgg |
323 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49761166 |
atgtgcttattcttaaaataaccgtaaacacttaattccttgggtttgtggcagattctctcttgggaaatatcctagaagatgaggtaagaaagaatgg |
49761067 |
T |
|
| Q |
324 |
cctaactaattaaaaacctataagacccttggattgaagtcaagacaaaacttgtttagattacaagaaatggtaagcataatttagtgtttatgcttaa |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49761066 |
cctaactaattaaaaacctataagacccttggattgaagtcaagacaaaacttgtttagattacaagaaatggtaagcataatttagtgtttatgcttaa |
49760967 |
T |
|
| Q |
424 |
agtcatcttcacttatttgtctgtttctaaacaaagcatctaagtaattggtatagtctcctaatttaatatactatatgataacatatttgaaggctga |
523 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
49760966 |
agtcatcttcacttatttgtctgtttctaaacaaagcatctaagtaattggtacagtctcctaatttaatatactatatgataacatatctgaaggctga |
49760867 |
T |
|
| Q |
524 |
ataac |
528 |
Q |
| |
|
||||| |
|
|
| T |
49760866 |
ataac |
49760862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University