View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13108_high_15 (Length: 444)
Name: NF13108_high_15
Description: NF13108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13108_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 168 - 439
Target Start/End: Original strand, 6998013 - 6998284
Alignment:
| Q |
168 |
aataccagatggcgaagaacgaagctatcatggaaattgatgaagaggaagaagaggataatgatgatgatgatgtggaaacttattcacaagaagaaca |
267 |
Q |
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| T |
6998013 |
aataccagatggcgaagaacgaagctatcatggaaattgatgaagaggaagaagaggataatgatgatgatgatgtggaaacttattcacaagaagaaca |
6998112 |
T |
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| Q |
268 |
agaacctgtccttccacgtggccgcaacaggcctaaaagggaagcttaaatttgaggtgatcttcagtaaacttgcaaatgagtagggaggaataaggga |
367 |
Q |
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| T |
6998113 |
agaacctgtccttccacgtggccgcaacaggcctaaaagggaagcttaaatttgaggtgatcttcagtaaacttgcaaatgagtagggaggaataaggga |
6998212 |
T |
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| Q |
368 |
ggtgtttatctataggctctaagtttctcttagttcatgttccattggttatctgctatcattctctctgct |
439 |
Q |
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| T |
6998213 |
ggtgtttatctataggctctaagtttctcttagttcatgttccattggttatctgctatcattctctctgct |
6998284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 6997864 - 6997951
Alignment:
| Q |
20 |
accagctcaataaggaatttctaatcttcatgtgcctctattcgcaaatttctaatttttaatcttcatgtgactcttaactaccctc |
107 |
Q |
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| T |
6997864 |
accagctcaataaggaatttctaatcttcatgtgcctctattcgcaaatttctaatttttaatcttcatgtgactcttaactaccctc |
6997951 |
T |
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