View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13108_high_29 (Length: 244)
Name: NF13108_high_29
Description: NF13108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13108_high_29 |
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| [»] scaffold0046 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 28469312 - 28469550
Alignment:
| Q |
1 |
attggcaattaatagggtagttgcaatttacgtcagatttatggtcttccatatttagatgaaagattttgctgtcacatatgcatcattgttttgtgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28469312 |
attggcaattaatagggtagttgcaatttacgtcagatttatggtcttccatatctagatgaaagattttgctgtcacatgtgcatcattgttttgtgat |
28469411 |
T |
|
| Q |
101 |
aattttcaagagttcctgaagaaatccatggttagagtgtgtagagggagaaagcttatgcaaaccgtccaaaaagtaacattttggtcatattacccca |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28469412 |
aattttcaagagttcttgaagaaatccatggttagagtgtgtagagggacaaagcttatgcaaaccgtccaaaaagtaacattttggtcatattacccca |
28469511 |
T |
|
| Q |
201 |
atttcaatagacatctctcgtgattggacctttgcttct |
239 |
Q |
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||||||| ||||||||||||||||||||||||| ||||| |
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| T |
28469512 |
atttcaaaagacatctctcgtgattggaccttttcttct |
28469550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 34734422 - 34734184
Alignment:
| Q |
1 |
attggcaattaatagggtagttgcaatttacgtcagatttatggtcttccatatttagatgaaagattttgctgtcacatatgcatcattgttttgtgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34734422 |
attggcaattaatagggtagttgcaatttacgtcagatttatggtcttccatatctagatgaaagattttgctgtcacatgtgcatcattgttttgtgat |
34734323 |
T |
|
| Q |
101 |
aattttcaagagttcctgaagaaatccatggttagagtgtgtagagggagaaagcttatgcaaaccgtccaaaaagtaacattttggtcatattacccca |
200 |
Q |
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| T |
34734322 |
aattttcaagagttcttgaagaaatccatggttagagtgtgtagagggacaaagcttatgcaaaccgtccaaaaagtaacattttggtcatattacccca |
34734223 |
T |
|
| Q |
201 |
atttcaatagacatctctcgtgattggacctttgcttct |
239 |
Q |
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||||||| ||||||||||||||||||||||||| ||||| |
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| T |
34734222 |
atttcaaaagacatctctcgtgattggaccttttcttct |
34734184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 2 - 239
Target Start/End: Complemental strand, 75726 - 75490
Alignment:
| Q |
2 |
ttggcaattaatagggtagttgcaatttacgtcagatttatggtcttccatatttagatgaaagattttgctgtcacatatgcatcattgttttgtgata |
101 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
75726 |
ttgggaattaatagggtagttgcaatttacgttagatttatggtcttccatatctagatgaaagattttgctgtcacatgtgcatcattgttttgtgata |
75627 |
T |
|
| Q |
102 |
attttcaagagttcctgaagaaatccatggttagagtgtgtagagggagaaagcttatgcaaaccgtccaaaaagtaacattttggtcatattaccccaa |
201 |
Q |
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|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
75626 |
attttcaagagttcttgaagaaatccatgg-tagagtgtgtagagggagaaagcttatgcaaaccgtccaaaaagtaacattttggtcatattaccccaa |
75528 |
T |
|
| Q |
202 |
tttcaatagacatctctcgtgattggacctttgcttct |
239 |
Q |
| |
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|||||| ||||||||||||||||||||||||| ||||| |
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| T |
75527 |
tttcaaaagacatctctcgtgattggaccttttcttct |
75490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 2 - 239
Target Start/End: Complemental strand, 24966405 - 24966169
Alignment:
| Q |
2 |
ttggcaattaatagggtagttgcaatttacgtcagatttatggtcttccatatttagatgaaagattttgctgtcacatatgcatcattgttttgtgata |
101 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24966405 |
ttgggaattaatagggtagttgcaatttacgttagatttatggtcttccatatctagatgaaagattttgctgtcacatgtgcatcattgttttgtgata |
24966306 |
T |
|
| Q |
102 |
attttcaagagttcctgaagaaatccatggttagagtgtgtagagggagaaagcttatgcaaaccgtccaaaaagtaacattttggtcatattaccccaa |
201 |
Q |
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|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24966305 |
attttcaagagttcttgaagaaatccatgg-tagagtgtgtagagggagaaagcttatgcaaaccgtccaaaaagtaacattttggtcatattaccccaa |
24966207 |
T |
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| Q |
202 |
tttcaatagacatctctcgtgattggacctttgcttct |
239 |
Q |
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|||||| ||||||||||||||||||||||||| ||||| |
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| T |
24966206 |
tttcaaaagacatctctcgtgattggaccttttcttct |
24966169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 29317887 - 29317723
Alignment:
| Q |
1 |
attggcaattaatagggtagttgcaatttacgtcagatttatggtcttccatatttagatgaaagattttgctgtcacatatgcatcattgttttgtgat |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
29317887 |
attggcaattaatatggtagttgcaatttacgtcagatttatggtcttccatatttagatgaaagattttgatgtcacatgtgcatcattgttttgtgat |
29317788 |
T |
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| Q |
101 |
aattttcaagagttcctgaagaaatccatggttagagtgtgtagagggagaaagcttatgcaaac |
165 |
Q |
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|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29317787 |
aactttcaagagttcctaaagaaatccatggttagagtgtgtagagggagaaagcttatgcaaac |
29317723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 29315611 - 29315533
Alignment:
| Q |
161 |
caaaccgtccaaaaagtaacattttggtcatattaccccaatttcaatagacatctctcgtgattggacctttgcttct |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
29315611 |
caaaccgtccaaaaagtaacattttggtcatattaccccaatttcaaaagacatctctcgtgattggaccttttcttct |
29315533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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