View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13108_high_5 (Length: 650)
Name: NF13108_high_5
Description: NF13108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13108_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 217 - 631
Target Start/End: Original strand, 427506 - 427921
Alignment:
| Q |
217 |
ttatgtggaatatcattattctttgccaaatctacatgggactttttaagattgtacattagctctctctctttctcttggagacctacttcaaagtccc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
427506 |
ttatgtggaatatcattattctttgccaaatctacatgggactttttaagattgtacattagctctctctctttctcttggagacctacttcaaagtccc |
427605 |
T |
|
| Q |
317 |
aaaacaagagaatatggtaatgatactcaaattgaaagagttctaaactacaatagcattgaattcaagatttaataaagcaagaattcgatcataaaaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
427606 |
aaaacaagagaatatggtaatgatactcaaattgaaagagttctaaactacaatagcattgaattcaagatttaataaagcaagaattcgatcataaaaa |
427705 |
T |
|
| Q |
417 |
atcagtatttcaactttcaatttttgtttttcaaaggtaaatttgaaaaaccaacctgttgagcttttgggttctttatgaggttggatttttaagctgc |
516 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
427706 |
atcagtatttcaactttcgatttttgtttttcaaaggtaaatttgaaaaaccaacctgttgagcttttgggttctttatgaggttggatttttaagctgc |
427805 |
T |
|
| Q |
517 |
cag-ccaagccataagagggtattcagagatggagaaaggaaggtggaaaatagattaaagaatgcacacgtaatgcataaaaacaataccaatgtaatg |
615 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
427806 |
cagcccaagccataagagggtattcagagatggagaaaggaaggtggaaaatagattaaagaatgcacacgtaatgcataaaaacaacaccaatgtaatg |
427905 |
T |
|
| Q |
616 |
caccacaagtccatca |
631 |
Q |
| |
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|||||||||||||||| |
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| T |
427906 |
caccacaagtccatca |
427921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 426229 - 426423
Alignment:
| Q |
22 |
attacttattttgtgatggcctagtggttgctctattaaagctgcatacatgaccttcaaaaagtatgccactttgatttaatagtgggtttccttgcat |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
426229 |
attacttattttgtgatggcctagtggttgctctattaaagctgcatgcatgaccttcaaaaagtatgccactttgatttaatagtgggtttccttgcat |
426328 |
T |
|
| Q |
122 |
tttacgcaaatgcgcaatttatggaacccctgaaatctacctaaagatcttgctaatctcttcccccaaatccattagtattagtttcaacgtca |
216 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
426329 |
tttacgcaaatgcgcaatttatggaacccctgaaatctacctaaagatcttgctaatctcttcccccaaatccattagtattagtttcaacgtca |
426423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 436759 - 436922
Alignment:
| Q |
22 |
attacttattttgtgatggcctagtggttgctctattaaagctgcatacatgaccttcaaaaagtatgccactttgatttaatagtgggtttccttgcat |
121 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| | |||||||||||||||| ||||||||||| |
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| T |
436759 |
attacttattttgtgatggcctagtagttgctctattaaagctttat----gaccttcaaaaagtatgtcgctttgatttaatagtgcatttccttgcat |
436854 |
T |
|
| Q |
122 |
tttacgcaaatgcgcaatttatggaacccctgaaatctacctaaagatcttgctaatctcttccccca |
189 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| |||| ||||||| ||||||||||||||||| |
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| T |
436855 |
tttacgcaaatgcacaatttatggaacccctgaaatccacctgaagatctcgctaatctcttccccca |
436922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 208; Significance: 1e-113; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 221 - 631
Target Start/End: Original strand, 15564089 - 15564493
Alignment:
| Q |
221 |
gtggaatatcattattctttgccaaatctacatgggactttttaagattgtacattagctctctctctttctcttggagacctacttcaaagtcccaaaa |
320 |
Q |
| |
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|||||| ||| |||||||||||||||| || |||||||||||||||| ||||||||| ||||||||| || ||||||||||||||| ||||| |
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| T |
15564089 |
gtggaacatcgttattctttgccaaatgtatatgggactttttaagaatgtacattacttctctctct-------ggcgacctacttcaaagtgacaaaa |
15564181 |
T |
|
| Q |
321 |
caagagaatatggtaatgatactcaaattgaaagagttctaaactacaatagcattgaattcaagatttaataaagcaagaattcgatcataaaaaatca |
420 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||| |||| ||||| ||||||| |||||| |
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| T |
15564182 |
caagataataaggtaatgatactcaaattgaaag-gtgctaaactacaatagcattgatttcaagatttaataa-gcaaaaattctatcataagaaatca |
15564279 |
T |
|
| Q |
421 |
gtatttcaactttcaatttttgtttttcaaaggtaaatttgaaaaaccaacctgttgagcttttgggttctttatgaggttggatttttaagctgccag- |
519 |
Q |
| |
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|||||||||||||| |||||| | ||||||| ||||| |||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
15564280 |
gtatttcaactttcgatttttctgtttcaaaagtaaaattgaaaaaccaacctgatgagattttgggttctttataaggttggatttttaagctgccagc |
15564379 |
T |
|
| Q |
520 |
ccaagccataagagggtattca-gagatggagaaaggaaggtggaaaatagattaaagaatgcacacgtaatgca-taaaaacaataccaatgtaatgca |
617 |
Q |
| |
|
||||||||| |||||| |||| |||||||||||||||||| | |||||| ||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
15564380 |
ccaagccatgagagggacttcaggagatggagaaaggaaggcgtcgaatagagtaaagaatgcacatgtaatgcacaaaaaacaataccaatgtaatgca |
15564479 |
T |
|
| Q |
618 |
ccacaagtccatca |
631 |
Q |
| |
|
|||||||||||||| |
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| T |
15564480 |
ccacaagtccatca |
15564493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 322 - 522
Target Start/End: Complemental strand, 18393248 - 18393050
Alignment:
| Q |
322 |
aagagaatatggtaatgatactcaaattgaaagagttctaaactacaatagcattgaattcaagatttaataaagcaagaattcgatcataaaaaatcag |
421 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| ||||| |||||||||||||| |
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| T |
18393248 |
aagataatatggtaatgatactcaaattgaaagagtgctaaactacaatagcattgaattctagatttaat-aagcaaaaattctatcataaaaaatcaa |
18393150 |
T |
|
| Q |
422 |
tatttcaactttcaatttttgtttttcaaaggtaaatttgaaaaaccaacctgttgagcttttgggttctttatgaggttggatttttaagctgccagcc |
521 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||| |||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
18393149 |
tatttaaactttcaatttttgtctttcaaaggtaatattgaaaaaccaacctgatgagattttgggtt-tttatgaggttggatttttaagctgtcagcc |
18393051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 15562891 - 15563081
Alignment:
| Q |
22 |
attacttattttgtgatggcctagtggttgctctattaaagctgcatacatgaccttcaaaaagtatgccactttgatttaatagtgggtttccttgcat |
121 |
Q |
| |
|
||||| || ||||| |||||| |||||||||||| | |||||||||| |||||||| |||||||||| |||||||||| ||||| ||||||||||| |
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|
| T |
15562891 |
attacctaatttgtaatggcccagtggttgctctttgaaagctgcat----gaccttcagaaagtatgccgctttgatttagtagtgcatttccttgcat |
15562986 |
T |
|
| Q |
122 |
tttacgcaaatgcgcaatttatggaacccctgaaatctacctaaagatcttgctaatctcttcccccaaatccattagtattagtttcaacgtca |
216 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||||||| | ||||| |||| |||||| |||| ||||||||||||||||||| |||||||||| |
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|
| T |
15562987 |
tttacgcaaatgcctaatttctggaacccgtgaaatccatctaaacatctcactaatcctttcctccaaatccattagtattagcttcaacgtca |
15563081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 18394467 - 18394299
Alignment:
| Q |
22 |
attacttattttgtgatggcctagtggttgctctattaaagctgcatacatgaccttcaaaaagtatgccactttgatttaatagtgggtttccttgcat |
121 |
Q |
| |
|
|||||||||||| || ||||||||||||| || |||||||||||| |||||||| ||| ||||||||||| ||||||||||| ||||||||||| |
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|
| T |
18394467 |
attacttattttacgacagcctagtggttgcacttttaaagctgcat----gaccttcagaaaatatgccactttcatttaatagtgaatttccttgcat |
18394372 |
T |
|
| Q |
122 |
tttacgcaaatgcgcaatttatggaacccctgaaatctacctaaagatcttgctaatctcttcccccaaatcc |
194 |
Q |
| |
|
|||||| ||||| |||||| ||||| |||||||||| ||||||| |||| | |||||||||||||||||||| |
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|
| T |
18394371 |
tttacgaaaatggccaatttctggaagccctgaaatccacctaaacatctcgttaatctcttcccccaaatcc |
18394299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 572 - 631
Target Start/End: Complemental strand, 18393045 - 18392986
Alignment:
| Q |
572 |
taaagaatgcacacgtaatgcataaaaacaataccaatgtaatgcaccacaagtccatca |
631 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
18393045 |
taaagaatgcacatgtaatgcacaaaaacaataccaatgtaaggcaccaaaagtccatca |
18392986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 15564078 - 15564035
Alignment:
| Q |
173 |
gctaatctcttcccccaaatccattagtattagtttcaacgtca |
216 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
15564078 |
gctaatctcttcccccaaatccagtagtattagttgtaacgtca |
15564035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 277
Target Start/End: Complemental strand, 18393327 - 18393274
Alignment:
| Q |
224 |
gaatatcattattctttgccaaatctacatgggactttttaagattgtacatta |
277 |
Q |
| |
|
||||| ||||||||||| ||||||||| |||||||||||| ||| |||||||| |
|
|
| T |
18393327 |
gaataccattattctttaccaaatctatatgggactttttgagaccgtacatta |
18393274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 19350883 - 19350948
Alignment:
| Q |
146 |
aacccctgaaatctacctaaagatcttgctaatctcttcccccaaatccattagtattagtttcaac |
212 |
Q |
| |
|
||||||||||||| ||||||| |||| |||||||||| |||||||||||||| ||||| |||||| |
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|
| T |
19350883 |
aacccctgaaatccacctaaacatctcactaatctctt-ccccaaatccattaccattagcttcaac |
19350948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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