View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13108_high_7 (Length: 594)
Name: NF13108_high_7
Description: NF13108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13108_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 6 - 551
Target Start/End: Complemental strand, 45402725 - 45402180
Alignment:
| Q |
6 |
gtagattatactgcaaggttataaagtatccggttaggctctatccatgatttttgttgcagggatagagaccaggtagtgtttgtgagtagcattatga |
105 |
Q |
| |
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| T |
45402725 |
gtagattatactgcaaggttataaaatatccggttaggctctatccatgatttttgttgcaaggatagagaccaggtaatgtttgtgagtagcattatga |
45402626 |
T |
|
| Q |
106 |
tnnnnnnntagtagggtgtattatgattagactacgtgcatataataatctaataaagtggactacaacactttttaactccctgccaccaatattttat |
205 |
Q |
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| T |
45402625 |
taaaaaa-tagtagggtgtattacgattagactacgtgcatataataatctaataatgtggactacaacactttttaactccctgccaccaatattttac |
45402527 |
T |
|
| Q |
206 |
cctataatttgagaaaattctagttcacctatttttcctcctctgccaagaaacaactttccaacttgtgaattaaaagctctactaagtaccaaaatac |
305 |
Q |
| |
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|||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45402526 |
cctataatatgagaaatttctagttcacctattttacctcctctgccaagaaacaactttccaacttgtgaattaaaagctctactaagtaccaatatac |
45402427 |
T |
|
| Q |
306 |
aatcagttatataagcatacataacgagcatgtctaaagtgataacattgacattagaatagaacaaaaaggaatttgaaaag-nnnnnnnnncactttt |
404 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
45402426 |
aatcagttatataagcatacataatgagcatgtctaaagtgataacattgacattagaatagaacaaaagggaatttgaaaagaaaaaaaaaacactttt |
45402327 |
T |
|
| Q |
405 |
ggattaacaaagtccaatataaaattgcagcctaaaagaatttagagaatttaaaactgaagcatagagaagaaattaaaggcagtgcagaaagagacct |
504 |
Q |
| |
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| T |
45402326 |
ggattaacaaagtccaacataaaattgcagcctaaaagaatttagagaatttaaaattgaagcatagagaagaaattaaaggcagtgcagaaagagacct |
45402227 |
T |
|
| Q |
505 |
ctgaaatcgtatccaacaccgatacctcaaccaacgccaaaacctgc |
551 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
45402226 |
ctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgc |
45402180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 235 - 353
Target Start/End: Complemental strand, 18812229 - 18812111
Alignment:
| Q |
235 |
tatttttcctcctctgccaagaaacaactttccaacttgtgaattaaaagctctactaagtaccaaaatacaatcagttatataagcatacataacgagc |
334 |
Q |
| |
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|||||||| ||| || |||||||| |||| | || | || ||||||||| ||||||||| |||||| ||||||| ||||||||||||||||||||||| |
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| T |
18812229 |
tatttttcatccactaccaagaaaaaactattcatcatgggaattaaaacctctactaaataccaatatacaataagttatataagcatacataacgaat |
18812130 |
T |
|
| Q |
335 |
atgtctaaagtgataacat |
353 |
Q |
| |
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| |||||| ||||||||| |
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| T |
18812129 |
ttttctaaaatgataacat |
18812111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 124 - 551
Target Start/End: Complemental strand, 23362196 - 23361767
Alignment:
| Q |
124 |
tattatgattagactacgtgcatataataatctaataaagtggactacaacactttttaactccctgccaccaatattttatcctataatttgagaaaat |
223 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
23362196 |
tattacgattagactacgtgcatataataatctaataatgtggactacaacactttttaactccctgccaccaatattttaccctataatctgagaaaat |
23362097 |
T |
|
| Q |
224 |
tctagttcacctatttttcctcctctgccaagaaacaactttccaacttgtgaattaaaagctctactaagtaccaaaatacaatcagttatataagcat |
323 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
23362096 |
tctagttcacctatttttcctcctctgccaagaaacaactttccaacttgtgaattaaaagctctactaagtaccaatatacaatcagttatataagcat |
23361997 |
T |
|
| Q |
324 |
acataacgagcatgtctaaagtgataacattgacattagaatagaacaaaaaggaatttgaaaag--nnnnnnnnncacttttggattaacaaagtccaa |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
23361996 |
acataacgagcatgtctaaagtgataacatttacattagaatagaacaaaagggaatttgaaaaggaaaaaaaaaacacttttggattaacaaagtccaa |
23361897 |
T |
|
| Q |
422 |
tataaaattgcagcctaaaagaatttagagaatttaaaactgaagcatagagaagaaattaaaggcagtgcagaaagagacctctgaaatcgtatccaac |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23361896 |
cataaaattgcagcctaaaagaatttagagaatttaaaattgaagcatagagaagaaattaaaggcattgcagaaagagacctctgaaatcgtatccaac |
23361797 |
T |
|
| Q |
522 |
accgatacctcaaccaacgccaaaacctgc |
551 |
Q |
| |
|
|| || |||||||||||| ||||||||||| |
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|
| T |
23361796 |
actgaaacctcaaccaacaccaaaacctgc |
23361767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 172 - 551
Target Start/End: Complemental strand, 19611709 - 19611328
Alignment:
| Q |
172 |
aacactttttaactccctgccaccaatattttatcctataatttgagaaaattctagttcacctatttttcctcctctgccaagaaacaactttccaact |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19611709 |
aacactttttaactccctgccaccaatattttaccctataatctgagaaaattctagttcacctatttttcctcctctgccaagaaacaactttccaact |
19611610 |
T |
|
| Q |
272 |
tgtgaattaaaagctctactaagtaccaaaatacaatcagttatataagcatacataacgagcatgtctaaagtgataacattgacattagaatagaaca |
371 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
19611609 |
tgtgaattaaaagctctactaagtaccaatatacaatcagttatataagcatacataatgagcatgtctaaagtgataacattgacattagaatagaaca |
19611510 |
T |
|
| Q |
372 |
aaaaggaatttgaaaag--nnnnnnnnncacttttggattaacaaagtccaatataaaattgcagcctaaaagaatttagagaatttaaaactgaagcat |
469 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
19611509 |
aaagggaatttgaaaagaaaaaaaaaaacacttttggattaacaaagtccaacataaaattgcagcctaaaagaatttagagaatttaaaattgaagcat |
19611410 |
T |
|
| Q |
470 |
agagaagaaattaaaggcagtgcagaaagagacctctgaaatcgtatccaacaccgatacctcaaccaacgccaaaacctgc |
551 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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|
| T |
19611409 |
agagaagaaattaaaggcagtgcagaaagagacctctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgc |
19611328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 175 - 551
Target Start/End: Complemental strand, 7600460 - 7600082
Alignment:
| Q |
175 |
actttttaactccctgccaccaatattttatcctataatttgagaaaattctagttcacctatttttcctcctctgccaagaaacaactttccaacttgt |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7600460 |
actttttaactccctgccaccaatattttaccctataatctgagaaaattctagttcacctatttttcctcctctgccaagaaacaactttccaacttgt |
7600361 |
T |
|
| Q |
275 |
gaattaaaagctctactaagtaccaaaatacaatcagttatataagcatacataacgagcatgtctaaagtgataacattgacattagaatagaacaaaa |
374 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7600360 |
gaattaaaagctctactaagtaccaatatacaatcagttatataagcatacataatgagcatgtctaaagtgataacattgacattagaatagaacaaaa |
7600261 |
T |
|
| Q |
375 |
aggaatttgaaaag--nnnnnnnnncacttttggattaacaaagtccaatataaaattgcagcctaaaagaatttagagaatttaaaactgaagcataga |
472 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
7600260 |
gggaatttgaaaagaaaaaaaaaaacacttttggattaacaaagtccaacataaaattgcagcctaaaagaatttagagaatttaaaattgaagcataga |
7600161 |
T |
|
| Q |
473 |
gaagaaattaaaggcagtgcagaaagagacctctgaaatcgtatccaacaccgatacctcaaccaacgccaaaacctgc |
551 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||| |
|
|
| T |
7600160 |
gaagaaattaaaggcagtgcagaaagagacctctgaaatcgtatccaacacagaaacctcaaccaacaccaaaacctgc |
7600082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 175 - 551
Target Start/End: Original strand, 28462062 - 28462441
Alignment:
| Q |
175 |
actttttaactccctgccaccaatattttatcctataatttgagaaaattctagttcacctatttttcctcctctgccaagaaacaactttccaacttgt |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28462062 |
actttttaactccctgccaccaatattttaccctataatctgagaaaattctagttcacctatttttcctcctctgccaagaaacaactttccaacttgt |
28462161 |
T |
|
| Q |
275 |
gaattaaaagctctactaagtaccaaaatacaatcagttatataagcatacataacgagcatgtctaaagtgataacattgacattagaatagaacaaaa |
374 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28462162 |
gaattaaaagctctactaagtaccaatatacaatcagttatataagcatacataatgagcatgtctaaagtgataacattgacattagaatagaacaaaa |
28462261 |
T |
|
| Q |
375 |
aggaatttgaaaag---nnnnnnnnncacttttggattaacaaagtccaatataaaattgcagcctaaaagaatttagagaatttaaaactgaagcatag |
471 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28462262 |
gggaatttgaaaagaaaaaaaaaaaacacttttggattaacaaagtccaacataaaattgcagcctaaaagaatttagagaatttaaaattgaagcatag |
28462361 |
T |
|
| Q |
472 |
agaagaaattaaaggcagtgcagaaagagacctctgaaatcgtatccaacaccgatacctcaaccaacgccaaaacctgc |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||| |
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|
| T |
28462362 |
agaagaaattaaaggcagtgcagaaagagacctctgaaatcgtatccaacacagaaacctcaaccaacaccaaaacctgc |
28462441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 347 - 539
Target Start/End: Original strand, 8835612 - 8835807
Alignment:
| Q |
347 |
ataacattgacattagaatagaacaaaaaggaatttgaaa-agnnnnnnnnncacttttggattaacaaagtccaatataaaattgcagcctaaaagaat |
445 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||| | ||||||||||||||||||||||| |||||||||||||||||||| ||| |
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|
| T |
8835612 |
ataacattgacattagaatagaacaaaaggaaatttgaaagaaagagaaaaacacttttggattaacaaagtccattataaaattgcagcctaaaataat |
8835711 |
T |
|
| Q |
446 |
ttagagaatttaaaactgaagcatagagaagaaattaaagg--cagtgcagaaagagacctctgaaatcgtatccaacaccgatacctcaaccaac |
539 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||| |||||||||||| |
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|
| T |
8835712 |
tttgagaatttaaaattgaagcatagagaagaaattaaaggtagagtgcagaaagagacctttgaaatcccatccaacaccgaaacctcaaccaac |
8835807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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