View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13108_high_9 (Length: 548)
Name: NF13108_high_9
Description: NF13108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13108_high_9 |
 | |
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| [»] scaffold0221 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Complemental strand, 14495821 - 14495281
Alignment:
| Q |
1 |
gattctctcaaccatctctcttcatggagaaacaccaactgttgtcaatggcgtggaatttactgtgataacatcacaggcgcggtcgtttcaatcgatc |
100 |
Q |
| |
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||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
14495821 |
gattctcacaaccgtctctcttcgtggagaaacaccaactgttgtcaatggcgtggaatttactgtgataacaacacaggcgcggtcatttcaatcgatc |
14495722 |
T |
|
| Q |
101 |
tccgtaacccagagccactgtcatttgattggaaactgagtggtgagctaagaccatctttgatgaagctcaagtcactaagttatttagacttgagctt |
200 |
Q |
| |
|
||| |||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||| |
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|
| T |
14495721 |
tccataacccgcatccaccgtcatttgattggaaactgagtggtgagctaagaccatctttgatgaagctcaagtcgctacggcatttagacttgagctt |
14495622 |
T |
|
| Q |
201 |
caacgcattcaagggaataccaattcccgagttctttggatcattggtgaatttgcaatatctgaacctgtcaactgctggctttgctggtttaattcca |
300 |
Q |
| |
|
|||| |||| | ||| |||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14495621 |
caacacatttggtgaaattccaattcctaagtttttaggatcattggtgaatttgcaatatctgaacctgtcaactgctggctttgctggtttaattcca |
14495522 |
T |
|
| Q |
301 |
ccccatttgggaaacctttctcaattgcaatatcttgatctcaaaactgttggtttgcatgttgaaaattttcaatgggttgttggccttgtctctttga |
400 |
Q |
| |
|
||||||||||||||||||||||| ||||||| | ||||||||| | | | | ||||||||||||||| | |||||||| ||||||||||||||||| |
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|
| T |
14495521 |
ccccatttgggaaacctttctcacttgcaatctattgatctcacagataatagcttgcatgttgaaaatctacaatgggtgactggccttgtctctttga |
14495422 |
T |
|
| Q |
401 |
aatatcttgccatgaatggagttgacctttcatcggtggcagcaacagacttggttagtgcagtaaaccaccttccttttttaatagaattgcatctatc |
500 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14495421 |
aatatcttgccatggatggagttgacctttcatcggtagcaggaacagacttggttagtgcagtaaaccaccttccttttttaatagaattgcatctatc |
14495322 |
T |
|
| Q |
501 |
ttcttgccatctttttggtcaaatttcatctccttcatctc |
541 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
14495321 |
ttcttgccatctttttggccaaatttcatctccttcatctc |
14495281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 139 - 541
Target Start/End: Original strand, 14460166 - 14460559
Alignment:
| Q |
139 |
agtggtgagctaagaccatctttgatgaagctcaagtcactaagttatttagacttgagcttcaacgcattcaagggaataccaattcccgagttctttg |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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|
| T |
14460166 |
agtggtgagctaagaccatctttgatgaagctcaagtcgctacggcatttagacttgagcttcaacacattcaatggaataccaattcccgagttctttg |
14460265 |
T |
|
| Q |
239 |
gatcattggtgaatttgcaatatctgaacctgtcaactgctggctttgctggtttaattccaccccatttgggaaacctttctcaattgcaatatcttga |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
14460266 |
gatcattggtgaatttgcaatatctgaacctgtcaactgct---------ggtttaattccaccccatttgggaaacctttctcacttgcaatatcttga |
14460356 |
T |
|
| Q |
339 |
tctcaaaactgttggtttgcatgttgaaaattttcaatgggttgttggccttgtctctttgaaatatcttgccatgaatggagttgacctttcatcggtg |
438 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14460357 |
tctcaaaactgttggcttgcatgttgaaaattttcaatgggttgttggccttgtctctttgaaatatcttgccatgaatggagttgacctttcatcagta |
14460456 |
T |
|
| Q |
439 |
gcagcaacagacttggttagtgcagtaaaccaccttccttttttaatagaattgcatctatcttcttgccatctttttggtcaaatttcatctccttcat |
538 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
14460457 |
gcaggaacagacttggttagtgcagtaaaccaccttccttttttaatagaattgcatctatcttcttgccatctttttggccaaatttcatctccttcat |
14460556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 130 - 533
Target Start/End: Original strand, 14455658 - 14456061
Alignment:
| Q |
130 |
tggaaactgagtggtgagctaagaccatctttgatgaagctcaagtcactaagttatttagacttgagcttcaacgcattcaagggaataccaattcccg |
229 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||| |||| | ||| |||||||| |
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|
| T |
14455658 |
tggaacctgagtggtgagctaagaccatctttgttgaagctcaaatcactaagacatttagacttgagcttcaacacatttggtgaaattccaattccta |
14455757 |
T |
|
| Q |
230 |
agttctttggatcattggtgaatttgcaatatctgaacctgtcaactgctggctttgctggtttaattccaccccatttgggaaacctttctcaattgca |
329 |
Q |
| |
|
| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
14455758 |
attttttaggatcattggtgaatttgcaatatctgaacctgtcaactgctggctttgctggtttaattccaccccatttgggaaacctttctcgcttgca |
14455857 |
T |
|
| Q |
330 |
atatcttgatctcaaaactgttggtttgcatgttgaaaattttcaatgggttgttggccttgtctctttgaaatatcttgccatgaatggagttgacctt |
429 |
Q |
| |
|
|| ||||||||||| | | | ||||||||||||||| | |||||||| | |||||| ||||| ||||||||||||| ||||||||||||||||||| |
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|
| T |
14455858 |
atctcttgatctcaccgattatagcttgcatgttgaaaatctacaatgggtagctggcctcgtctccttgaaatatcttgtcatgaatggagttgacctt |
14455957 |
T |
|
| Q |
430 |
tcatcggtggcagcaacagacttggttagtgcagtaaaccaccttccttttttaatagaattgcatctatcttcttgccatctttttggtcaaatttcat |
529 |
Q |
| |
|
|||| || |||| |||| ||| ||||||| || ||| ||| |||||||||||||||||||||||||| || || || ||||||||||| ||| ||| |
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|
| T |
14455958 |
tcattagtagcagaaacaaactgggttagttcattaagccaatttccttttttaatagaattgcatctacatttctgtcagctttttggtcatattccat |
14456057 |
T |
|
| Q |
530 |
ctcc |
533 |
Q |
| |
|
|||| |
|
|
| T |
14456058 |
ctcc |
14456061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 140 - 530
Target Start/End: Complemental strand, 14471261 - 14470871
Alignment:
| Q |
140 |
gtggtgagctaagaccatctttgatgaagctcaagtcactaagttatttagacttgagcttcaacgcattcaagggaataccaattcccgagttctttgg |
239 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||| |||||| | ||||||||| || |||| || || |
|
|
| T |
14471261 |
gtggtgagctaagaccgtctttgatgaaactcaaatcactaaggcatttagacttgagcttcaacacattcagagcaataccaatacctaagtttttagg |
14471162 |
T |
|
| Q |
240 |
atcattggtgaatttgcaatatctgaacctgtcaactgctggctttgctggtttaattccaccccatttgggaaacctttctcaattgcaatatcttgat |
339 |
Q |
| |
|
|||||| || ||||| |||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||| |
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|
| T |
14471161 |
atcattagtaaatttacaatatctgaacctttcaaatgctggatttgctggtttaattccaccccatttgggaaatctttctcacttgcaatctcttgat |
14471062 |
T |
|
| Q |
340 |
ctcaaaactgttggtttgcatgttgaaaattttcaatgggttgttggccttgtctctttgaaatatcttgccatgaatggagttgacctttcatcggtgg |
439 |
Q |
| |
|
||| || || | ||||||||||||||| | || ||| | | ||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| |
|
|
| T |
14471061 |
ctcggtgcttttagattgcatgttgaaaatctacactggttggctggccttgtctctttgaaacatcttgccatggatagagttgacctttcatcggtgg |
14470962 |
T |
|
| Q |
440 |
cagcaacagacttggttagtgcagtaaaccaccttccttttttaatagaattgcatctatcttcttgccatctttttggtcaaatttcatc |
530 |
Q |
| |
|
| |||||| | ||||||| || | ||||| || |||| |||||| |||||||||||||||||||| | ||||||||||| ||| |||| |
|
|
| T |
14470961 |
cgagaacagattgggttagtacactgaaccagctaccttctttaatgaaattgcatctatcttcttgcaaactttttggtcatattccatc |
14470871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 14460004 - 14460114
Alignment:
| Q |
1 |
gattctctcaaccatctctcttcatggagaaacaccaactgttgtcaatggcgtggaatttactgtgataacatcacaggcgcggtcgtttcaatcgatc |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14460004 |
gattctcacaaccatctctcttcatggagaaacaccaactgttgtcaatggcgtggaatttactgtgataacatcacaggcgcggtcgtttcaatcgatc |
14460103 |
T |
|
| Q |
101 |
tccgtaaccca |
111 |
Q |
| |
|
||| ||||||| |
|
|
| T |
14460104 |
tccataaccca |
14460114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 14455505 - 14455634
Alignment:
| Q |
1 |
gattctctcaaccatctctcttcatggagaaacaccaactgttgtcaatggcgtggaatttactgtgataacatcacaggcgcggtcgtttcaatcgatc |
100 |
Q |
| |
|
||||||| ||||| ||||||||| |||| ||||||||| ||||||||||||||||||||||| || |||||||||||||| |||||| ||||||| |||| |
|
|
| T |
14455505 |
gattctcacaaccgtctctcttcgtggaaaaacaccaattgttgtcaatggcgtggaatttattgcgataacatcacaggtgcggtcatttcaattgatc |
14455604 |
T |
|
| Q |
101 |
tccgtaacccagagccactgtcatttgatt |
130 |
Q |
| |
|
||| ||| ||| | |||| |||||||||| |
|
|
| T |
14455605 |
tccataatccacatccaccatcatttgatt |
14455634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 14471424 - 14471315
Alignment:
| Q |
1 |
gattctctcaaccatctctcttcatggagaaacaccaactgttgtcaatggcgtggaatttactgtgataacatcacaggcgcggtcgtttcaatcgatc |
100 |
Q |
| |
|
||||||| ||||| |||||| || ||||||| || ||| ||||||||||||| |||||| | ||| |||||||||||||| ||||||||| |||| |||| |
|
|
| T |
14471424 |
gattctcacaaccgtctctcgtcgtggagaagcaacaattgttgtcaatggcatggaatatgctgcgataacatcacaggtgcggtcgttgcaattgatc |
14471325 |
T |
|
| Q |
101 |
tccgtaaccc |
110 |
Q |
| |
|
||| |||||| |
|
|
| T |
14471324 |
tccataaccc |
14471315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 139 - 402
Target Start/End: Original strand, 9745 - 9999
Alignment:
| Q |
139 |
agtggtgagctaagaccatctttgatgaagctcaagtcactaagttatttagacttgagcttcaacgcattcaagggaataccaattcccgagttctttg |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
9745 |
agtggtgagctaagaccatctttgatgaagctcaagtcgctacggcatttagacttgagcttcaacacattcaatggaataccaattcccgagttctttg |
9844 |
T |
|
| Q |
239 |
gatcattggtgaatttgcaatatctgaacctgtcaactgctggctttgctggtttaattccaccccatttgggaaacctttctcaattgcaatatcttga |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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|
| T |
9845 |
gatcattggtgaatttgcaatatctgaacctgtcaac---------tgctggtttaattccaccccatttgggaaacctttctctcttgcaatctcttga |
9935 |
T |
|
| Q |
339 |
tctcaaaactgttggtttgcatgttgaaaattttcaatgggttgttggccttgtctctttgaaa |
402 |
Q |
| |
|
||||| | | | | ||||||||||||||| | |||||||| | ||| |||||||||||||| |
|
|
| T |
9936 |
tctcacagataatagcttgcatgttgaaaatctacaatgggtggatggatttgtctctttgaaa |
9999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 9612 - 9693
Alignment:
| Q |
30 |
aaacaccaactgttgtcaatggcgtggaatttactgtgataacatcacaggcgcggtcgtttcaatcgatctccgtaaccca |
111 |
Q |
| |
|
||||| ||| ||||||||||||| ||||| || || |||||||||||| |||||| ||||||||||||||||| ||||||| |
|
|
| T |
9612 |
aaacaacaattgttgtcaatggcacggaatatattgcgataacatcacaagcgcggacgtttcaatcgatctccataaccca |
9693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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