View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13108_low_1 (Length: 1024)

Name: NF13108_low_1
Description: NF13108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13108_low_1
NF13108_low_1
[»] chr6 (8 HSPs)
chr6 (364-1007)||(6697476-6698114)
chr6 (71-366)||(6697147-6697443)
chr6 (885-964)||(30127398-30127478)
chr6 (5-48)||(6697085-6697128)
chr6 (886-962)||(33549104-33549181)
chr6 (929-962)||(14557962-14557995)
chr6 (886-962)||(21418470-21418547)
chr6 (929-962)||(31623034-31623067)
[»] chr3 (12 HSPs)
chr3 (422-676)||(34666623-34666883)
chr3 (929-962)||(36720381-36720414)
chr3 (881-961)||(47454611-47454692)
chr3 (930-963)||(47810788-47810821)
chr3 (930-962)||(2597264-2597296)
chr3 (929-962)||(8051214-8051247)
chr3 (929-962)||(10499152-10499185)
chr3 (929-962)||(24459990-24460023)
chr3 (929-962)||(24478155-24478188)
chr3 (924-965)||(31510756-31510797)
chr3 (926-963)||(40286897-40286934)
chr3 (929-962)||(47079701-47079734)
[»] chr4 (11 HSPs)
chr4 (452-545)||(12870319-12870413)
chr4 (886-952)||(30557269-30557336)
chr4 (924-964)||(19238615-19238655)
chr4 (929-963)||(9241068-9241102)
chr4 (886-964)||(19229207-19229285)
chr4 (925-963)||(46545710-46545748)
chr4 (910-958)||(4911255-4911304)
chr4 (925-962)||(10538806-10538843)
chr4 (925-958)||(13901746-13901779)
chr4 (929-962)||(51250565-51250598)
chr4 (929-962)||(55427243-55427276)
[»] scaffold0258 (1 HSPs)
scaffold0258 (886-962)||(15322-15399)
[»] chr8 (8 HSPs)
chr8 (886-962)||(35641900-35641977)
chr8 (886-964)||(6530805-6530883)
chr8 (886-962)||(28783060-28783137)
chr8 (474-552)||(5891076-5891154)
chr8 (886-962)||(968362-968439)
chr8 (910-962)||(6436578-6436631)
chr8 (886-962)||(16852340-16852417)
chr8 (925-958)||(33692341-33692374)
[»] chr5 (7 HSPs)
chr5 (887-962)||(22737082-22737158)
chr5 (924-964)||(8278313-8278353)
chr5 (888-958)||(16436622-16436692)
chr5 (886-962)||(16773807-16773884)
chr5 (929-962)||(21589288-21589321)
chr5 (929-962)||(30883241-30883274)
chr5 (929-962)||(34984806-34984839)
[»] chr2 (8 HSPs)
chr2 (924-962)||(19016031-19016069)
chr2 (882-962)||(29197371-29197452)
chr2 (925-962)||(30808686-30808723)
chr2 (926-962)||(35916086-35916122)
chr2 (929-962)||(3697442-3697475)
chr2 (926-963)||(5147719-5147756)
chr2 (886-962)||(35710391-35710468)
chr2 (929-962)||(37480075-37480108)
[»] scaffold0517 (1 HSPs)
scaffold0517 (925-962)||(7765-7802)
[»] chr7 (13 HSPs)
chr7 (925-962)||(30579335-30579372)
chr7 (886-966)||(43590903-43590984)
chr7 (929-965)||(22760860-22760896)
chr7 (924-962)||(2446308-2446346)
chr7 (924-962)||(41487362-41487400)
chr7 (929-962)||(4161288-4161321)
chr7 (886-962)||(20335830-20335907)
chr7 (929-962)||(22702240-22702273)
chr7 (929-962)||(22932754-22932787)
chr7 (910-958)||(23595733-23595782)
chr7 (926-963)||(24513796-24513833)
chr7 (929-962)||(43215184-43215217)
chr7 (929-962)||(48125217-48125250)
[»] chr1 (11 HSPs)
chr1 (925-962)||(37400274-37400311)
chr1 (925-962)||(40257399-40257436)
chr1 (452-543)||(24609194-24609285)
chr1 (886-964)||(18037612-18037691)
chr1 (924-962)||(21694446-21694484)
chr1 (910-959)||(26232409-26232459)
chr1 (926-964)||(44961763-44961801)
chr1 (929-962)||(2219972-2220005)
chr1 (929-962)||(19528370-19528403)
chr1 (929-962)||(37046985-37047018)
chr1 (924-965)||(52116819-52116860)
[»] scaffold0260 (1 HSPs)
scaffold0260 (929-964)||(15364-15399)
[»] scaffold0118 (1 HSPs)
scaffold0118 (926-964)||(41673-41711)
[»] scaffold0070 (1 HSPs)
scaffold0070 (929-959)||(38945-38975)


Alignment Details
Target: chr6 (Bit Score: 485; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 364 - 1007
Target Start/End: Original strand, 6697476 - 6698114
Alignment:
Q  364 aatatttacatttagcatctgacacatatcgactgttattcatagatataacttgtttaagaggggtattcttggtcatgagggacatcggattgtgctt 463  Q
    |||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6697476 aatatttacatttagcgtctaacacatttcgactgttattcatagatataacttgtttaagaggggtattcttggtcatgagggacatcggattgtgctt 6697575  T
Q  464 ggtgtgtgggaatgataaaggaggaagatcatcttttttataggtgtggttttgccggatcggtttggtatcatattttcaagtaggtgagtctacgggt 563  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6697576 ggtgtgtgggaatgataaaggaggaagatcatcttttttataggtgtggttttgccggatcggtttggtatcatattttcaagtaggtgagtctacgggt 6697675  T
Q  564 atgattttacccgtaaacattatcattctctttgattatttctactcctctaattttaagcatcggaaagggctaatgtgaatttggcaaacaacggtct 663  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6697676 atgattttacccgtaaacattatcattctctttgattatttctactcctctaattttaagcatcggaaagggctaatgtgaatttggcaaacaacagtct 6697775  T
Q  664 aaaaaatttgggactcaagaaataaaattatcttttctgcgaagaatccaaatattgacggagacggggttactaatcttcacaagtaatttagttgttc 763  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6697776 aaaaaatttgggacttaagaaatagaattatcttttctgcgaagaatccaaatattgacggagacggggttactaatcttcacaagtaatttagttgttc 6697875  T
Q  764 gattcgtgttgattcaacnnnnnnnnnnnngaagggaaatatagaatggacgatttatcttctttttaccgaatcaacattaatcacgtcnnnnnnnnnn 863  Q
    ||||||||||||||||||            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||              
T  6697876 gattcgtgttgattcaac-----aaaaaaagaagggaaatatagagtggacgatttatcttctttttaccgaatcaacattaatcacgtcttttattttt 6697970  T
Q  864 nnnnnnnnaagaagctatgggaagaatcgaacatgagacatcggaaaggagcacaatcctagtctcaagccaataccaccagaccaacccaagtgggtta 963  Q
            |||||||||||||||||||||||||| |||| || |||||||||||||| ||| |||||||||||||||||||||||||||| | | |||||    
T  6697971 aattttttaagaagctatgggaagaatcgaacataagacctcagaaaggagcacaattctaatctcaagccaataccaccagaccaacccgaataggtta 6698070  T
Q  964 atcacgtcattgtctgagtaatagtgtgtaacatcggttatcga 1007  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  6698071 atcacgtcattgtctgagtaatagtgcgtaacatcggttatcga 6698114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 71 - 366
Target Start/End: Original strand, 6697147 - 6697443
Alignment:
Q  71 caaacacattcaagtatcaaattttgagttagagatataacaatattgtgatgtcatcgatttcaaactatatatgctgatcaattatgagtgtaagatc 170  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6697147 caaacacattcaagtattaaattttgagttagagatataacaatattgtgatgtcatcgatttcaaactatatatgctgatcaattatgagtgtaagatc 6697246  T
Q  171 aattatattcatcatttcatttgcagttgtgctcaagaacaacctcatgtggttccnnnnnnnnnnnnnggttacaccatgtggttccttaaaccatcat 270  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||    
T  6697247 aattgtattcatcatttcatttgcagttgtgctcaagaacaacctcatgtggttccttttttgttttttggttacaccatgtggttccttaaaccatcat 6697346  T
Q  271 gatactggtc-tggccttgcatcgaagtatatcattaatgcatatattaaaacatacaaccaggaacaatgttgcgtcggggttaaacttctacaat 366  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  6697347 gatactggtcatggccttgcatcgaagtatatcattaatgcatatattaaaacatacaaccaggaacaatgttgggtcggggttagacttctacaat 6697443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 885 - 964
Target Start/End: Complemental strand, 30127478 - 30127398
Alignment:
Q  885 aagaatcgaacatgagacatcggaaaggagcacaatcctagtctc-aagccaataccaccagaccaacccaagtgggttaa 964  Q
    ||||||||||| |||||| ||| | ||||||||| ||| || | | |||||||||||||||||||||||||||||||||||    
T  30127478 aagaatcgaacctgagacctcgaagaggagcacactcccagaccccaagccaataccaccagaccaacccaagtgggttaa 30127398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 6697085 - 6697128
Alignment:
Q  5 tgtccaagaaaataggaatgataatttgattttagatctagtat 48  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  6697085 tgtccaacaaaataggaatgataatttgattttagatctagtat 6697128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 886 - 962
Target Start/End: Complemental strand, 33549181 - 33549104
Alignment:
Q  886 agaatcgaacatgagacatcggaaaggagcacaatcctag-tctcaagccaataccaccagaccaacccaagtgggtt 962  Q
    |||||||||| |||||| |||   ||||||||| ||| || || ||||||||||||||||||||||||||||||||||    
T  33549181 agaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggtt 33549104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 962
Target Start/End: Complemental strand, 14557995 - 14557962
Alignment:
Q  929 caagccaataccaccagaccaacccaagtgggtt 962  Q
    |||||||| |||||||||||||||||||||||||    
T  14557995 caagccaacaccaccagaccaacccaagtgggtt 14557962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 886 - 962
Target Start/End: Complemental strand, 21418547 - 21418470
Alignment:
Q  886 agaatcgaacatgagacatcggaaaggagcacaatccta-gtctcaagccaataccaccagaccaacccaagtgggtt 962  Q
    |||||||||| |||||||| |   ||||||||| ||| | ||| ||||||||||||||||| ||||||||| ||||||    
T  21418547 agaatcgaacttgagacatggaggaggagcacactcccaagtcccaagccaataccaccaggccaacccaactgggtt 21418470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 962
Target Start/End: Original strand, 31623034 - 31623067
Alignment:
Q  929 caagccaataccaccagaccaacccaagtgggtt 962  Q
    ||||||||||||||| ||||||||||||||||||    
T  31623034 caagccaataccaccggaccaacccaagtgggtt 31623067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 8e-33; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 422 - 676
Target Start/End: Complemental strand, 34666883 - 34666623
Alignment:
Q  422 aagagggg-tattcttggtcatgagggacatcggattgtgcttggtgtgtgggaatgataaaggaggaagatcatcttttttataggtgtggttttgccg 520  Q
    |||||||| ||||| |||| |||| || || ||||||||| || |||||||| ||||||| | ||||||||||||||||||| || || |||||||||||    
T  34666883 aagaggggatattcgtggtgatgaaggtcagcggattgtgtttagtgtgtggaaatgatagaagaggaagatcatcttttttgtatgtatggttttgccg 34666784  T
Q  521 gatcggtttggtatcatattttcaagtaggtgagtctacgggtatgattttacccgtaaacattatcattctctttgattatttcta------ctcctct 614  Q
     |||| |||||| |||||||||||||| |||| || ||  ||| | ||||||| |  ||||||||||| ||||| ||||||||| ||      ||| |||    
T  34666783 catcgatttggtgtcatattttcaagttggtgggtata--ggtgtaattttactcagaaacattatcactctctctgattatttatattcatcctcttct 34666686  T
Q  615 aattttaagcatcgg-aaagggctaatgtgaatttggcaaacaacggtctaaaaaatttggga 676  Q
    ||||| || |||||| |||||  |||||| ||||||||||||||||||||  |||||||||||    
T  34666685 aatttcaaacatcggaaaaggtttaatgttaatttggcaaacaacggtctggaaaatttggga 34666623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 929 - 962
Target Start/End: Complemental strand, 36720414 - 36720381
Alignment:
Q  929 caagccaataccaccagaccaacccaagtgggtt 962  Q
    ||||||||||||||||||||||||||||||||||    
T  36720414 caagccaataccaccagaccaacccaagtgggtt 36720381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 881 - 961
Target Start/End: Original strand, 47454611 - 47454692
Alignment:
Q  881 tgggaagaatcgaacatgagacatcggaaaggagcacaatcctag-tctcaagccaataccaccagaccaacccaagtgggt 961  Q
    |||| |||||||||| |||||| |||   ||||||||| ||| || ||||||||||||||||| ||| ||||||||||||||    
T  47454611 tggggagaatcgaacctgagacctcgaggaggagcacactccaagatctcaagccaataccactagaacaacccaagtgggt 47454692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 930 - 963
Target Start/End: Original strand, 47810788 - 47810821
Alignment:
Q  930 aagccaataccaccagaccaacccaagtgggtta 963  Q
    ||||||||||||||||||||||||||||||||||    
T  47810788 aagccaataccaccagaccaacccaagtgggtta 47810821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 930 - 962
Target Start/End: Original strand, 2597264 - 2597296
Alignment:
Q  930 aagccaataccaccagaccaacccaagtgggtt 962  Q
    |||||||||||||||||||||||||||||||||    
T  2597264 aagccaataccaccagaccaacccaagtgggtt 2597296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 962
Target Start/End: Complemental strand, 8051247 - 8051214
Alignment:
Q  929 caagccaataccaccagaccaacccaagtgggtt 962  Q
    ||||||||||||||||| ||||||||||||||||    
T  8051247 caagccaataccaccaggccaacccaagtgggtt 8051214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 962
Target Start/End: Original strand, 10499152 - 10499185
Alignment:
Q  929 caagccaataccaccagaccaacccaagtgggtt 962  Q
    ||||||||||||||||| ||||||||||||||||    
T  10499152 caagccaataccaccaggccaacccaagtgggtt 10499185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 962
Target Start/End: Complemental strand, 24460023 - 24459990
Alignment:
Q  929 caagccaataccaccagaccaacccaagtgggtt 962  Q
    ||||||||||||||||| ||||||||||||||||    
T  24460023 caagccaataccaccaggccaacccaagtgggtt 24459990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 962
Target Start/End: Complemental strand, 24478188 - 24478155
Alignment:
Q  929 caagccaataccaccagaccaacccaagtgggtt 962  Q
    |||||||||||||||| |||||||||||||||||    
T  24478188 caagccaataccaccaaaccaacccaagtgggtt 24478155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 924 - 965
Target Start/End: Original strand, 31510756 - 31510797
Alignment:
Q  924 agtctcaagccaataccaccagaccaacccaagtgggttaat 965  Q
    |||| |||| ||||||||||||||||||| ||||||||||||    
T  31510756 agtcccaagtcaataccaccagaccaacctaagtgggttaat 31510797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 926 - 963
Target Start/End: Original strand, 40286897 - 40286934
Alignment:
Q  926 tctcaagccaataccaccagaccaacccaagtgggtta 963  Q
    |||||||| || ||||||||||||||||||||||||||    
T  40286897 tctcaagcgaacaccaccagaccaacccaagtgggtta 40286934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 962
Target Start/End: Complemental strand, 47079734 - 47079701
Alignment:
Q  929 caagccaataccaccagaccaacccaagtgggtt 962  Q
    |||||||| |||||||||||||||||||||||||    
T  47079734 caagccaacaccaccagaccaacccaagtgggtt 47079701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 3e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 452 - 545
Target Start/End: Original strand, 12870319 - 12870413
Alignment:
Q  452 cggattgtgcttggtgtgtgggaatgataaaggaggaagatcatct-tttttataggtgtggttttgccggatcggtttggtatcatattttcaa 545  Q
    ||||||||| |||||||||| |||||||| | |||||| ||||||| ||||| || |||| |||||||||| |||||| ||||||||||||||||    
T  12870319 cggattgtgtttggtgtgtgtgaatgatagaagaggaatatcatctctttttgtatgtgtagttttgccggttcggttaggtatcatattttcaa 12870413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 886 - 952
Target Start/End: Original strand, 30557269 - 30557336
Alignment:
Q  886 agaatcgaacatgagacatcggaaaggagcacaatccta-gtctcaagccaataccaccagaccaacc 952  Q
    ||||||||||||||| | ||| ||||||||||| ||||| ||| |||| |||||||||||||||||||    
T  30557269 agaatcgaacatgagccctcgaaaaggagcacactcctacgtcccaagtcaataccaccagaccaacc 30557336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 924 - 964
Target Start/End: Original strand, 19238615 - 19238655
Alignment:
Q  924 agtctcaagccaataccaccagaccaacccaagtgggttaa 964  Q
    |||| ||||||||||||||||| ||||||||||||||||||    
T  19238615 agtcccaagccaataccaccaggccaacccaagtgggttaa 19238655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 929 - 963
Target Start/End: Original strand, 9241068 - 9241102
Alignment:
Q  929 caagccaataccaccagaccaacccaagtgggtta 963  Q
    ||||||||||||||||| |||||||||||||||||    
T  9241068 caagccaataccaccaggccaacccaagtgggtta 9241102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 886 - 964
Target Start/End: Original strand, 19229207 - 19229285
Alignment:
Q  886 agaatcgaacatgagacatcggaaaggagcacaatcctagtctcaagccaataccaccagaccaacccaagtgggttaa 964  Q
    |||||||||| |||||| |||   ||||||||| ||  |||| || |||||||||||||| ||||||||| ||||||||    
T  19229207 agaatcgaacctgagacctcgaggaggagcacattctaagtcccaggccaataccaccaggccaacccaaatgggttaa 19229285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 925 - 963
Target Start/End: Complemental strand, 46545748 - 46545710
Alignment:
Q  925 gtctcaagccaataccaccagaccaacccaagtgggtta 963  Q
    |||||||||||||||||| || |||||||||||||||||    
T  46545748 gtctcaagccaataccactaggccaacccaagtgggtta 46545710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 910 - 958
Target Start/End: Original strand, 4911255 - 4911304
Alignment:
Q  910 aggagcacaatccta-gtctcaagccaataccaccagaccaacccaagtg 958  Q
    ||||||||| ||||| ||| ||||| ||||||||||||||||||||||||    
T  4911255 aggagcacactcctaagtcccaagctaataccaccagaccaacccaagtg 4911304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 925 - 962
Target Start/End: Complemental strand, 10538843 - 10538806
Alignment:
Q  925 gtctcaagccaataccaccagaccaacccaagtgggtt 962  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  10538843 gtctcaagccaacaccaccagaccaactcaagtgggtt 10538806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 925 - 958
Target Start/End: Complemental strand, 13901779 - 13901746
Alignment:
Q  925 gtctcaagccaataccaccagaccaacccaagtg 958  Q
    |||||||||||||||||| |||||||||||||||    
T  13901779 gtctcaagccaataccactagaccaacccaagtg 13901746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 962
Target Start/End: Original strand, 51250565 - 51250598
Alignment:
Q  929 caagccaataccaccagaccaacccaagtgggtt 962  Q
    ||||||||||||||||| ||||||||||||||||    
T  51250565 caagccaataccaccaggccaacccaagtgggtt 51250598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 962
Target Start/End: Original strand, 55427243 - 55427276
Alignment:
Q  929 caagccaataccaccagaccaacccaagtgggtt 962  Q
    ||||||||||||||||| ||||||||||||||||    
T  55427243 caagccaataccaccaggccaacccaagtgggtt 55427276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 886 - 962
Target Start/End: Original strand, 15322 - 15399
Alignment:
Q  886 agaatcgaacatgagacatcggaaaggagcacaatcctag-tctcaagccaataccaccagaccaacccaagtgggtt 962  Q
    |||||||||| |||||| |||   ||||||||| ||| || || ||||||||||||||||||||||||||||||||||    
T  15322 agaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggtt 15399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 886 - 962
Target Start/End: Original strand, 35641900 - 35641977
Alignment:
Q  886 agaatcgaacatgagacatcggaaaggagcacaatcctag-tctcaagccaataccaccagaccaacccaagtgggtt 962  Q
    |||||||||| ||||||||||   ||||||||| ||| |  ||||||||| |||||||||||||||||||||||||||    
T  35641900 agaatcgaacctgagacatcgaggaggagcacactcccaaatctcaagccgataccaccagaccaacccaagtgggtt 35641977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 886 - 964
Target Start/End: Complemental strand, 6530883 - 6530805
Alignment:
Q  886 agaatcgaacatgagacatcggaaaggagcacaatcctag-tctcaagccaataccaccagaccaacccaagtgggttaa 964  Q
    |||||||||| |||||||| | | ||||||||| |||||| || |||||||| |||||||| ||||||||||||||||||    
T  6530883 agaatcgaacctgagacattg-agaggagcacactcctaggtcccaagccaacaccaccaggccaacccaagtgggttaa 6530805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 886 - 962
Target Start/End: Complemental strand, 28783137 - 28783060
Alignment:
Q  886 agaatcgaacatgagacatcggaaaggagcacaatcctag-tctcaagccaataccaccagaccaacccaagtgggtt 962  Q
    ||||||||||||||||| | |   ||||||||| ||| || |||||||||||||||||||  ||||||||||||||||    
T  28783137 agaatcgaacatgagaccttgaggaggagcacactcccaggtctcaagccaataccaccaagccaacccaagtgggtt 28783060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 474 - 552
Target Start/End: Complemental strand, 5891154 - 5891076
Alignment:
Q  474 aatgataaaggaggaagatcatcttttttataggtgtggttttgccggatcggtttggtatcatattttcaagtaggtg 552  Q
    |||| |||| |||| ||| | ||| |||| |||||||| ||||||||  || |||||||||||||||||||||| ||||    
T  5891154 aatggtaaaagaggcagaccgtctcttttgtaggtgtgattttgccgattcagtttggtatcatattttcaagtgggtg 5891076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 886 - 962
Target Start/End: Complemental strand, 968439 - 968362
Alignment:
Q  886 agaatcgaacatgagacatcggaaaggagcacaatcctag-tctcaagccaataccaccagaccaacccaagtgggtt 962  Q
    |||||||||| |||||| |||   ||||||||| ||| || || ||||||||||||||||| ||||| ||||||||||    
T  968439 agaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccaggccaactcaagtgggtt 968362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 910 - 962
Target Start/End: Original strand, 6436578 - 6436631
Alignment:
Q  910 aggagcacaatccta-gtctcaagccaataccaccagaccaacccaagtgggtt 962  Q
    ||||||||| ||||| ||| |||||||||||||||||  |||||||||||||||    
T  6436578 aggagcacactcctaagtcccaagccaataccaccagggcaacccaagtgggtt 6436631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 886 - 962
Target Start/End: Complemental strand, 16852417 - 16852340
Alignment:
Q  886 agaatcgaacatgagacatcggaaaggagcacaatcctag-tctcaagccaataccaccagaccaacccaagtgggtt 962  Q
    |||||||||| |||||| |||   ||||||||| ||| || || |||||||||||||| || ||||||||||||||||    
T  16852417 agaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 16852340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 925 - 958
Target Start/End: Original strand, 33692341 - 33692374
Alignment:
Q  925 gtctcaagccaataccaccagaccaacccaagtg 958  Q
    |||||||||||||||||||| |||||||||||||    
T  33692341 gtctcaagccaataccaccaaaccaacccaagtg 33692374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 887 - 962
Target Start/End: Complemental strand, 22737158 - 22737082
Alignment:
Q  887 gaatcgaacatgagacatcggaaaggagcacaat-cctagtctcaagccaataccaccagaccaacccaagtgggtt 962  Q
    ||||||||| |||||||| ||  ||||||||| | || |||| |||||||||||||| |||||||||||||||||||    
T  22737158 gaatcgaacctgagacattggggaggagcacacttccaagtcccaagccaataccactagaccaacccaagtgggtt 22737082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 924 - 964
Target Start/End: Original strand, 8278313 - 8278353
Alignment:
Q  924 agtctcaagccaataccaccagaccaacccaagtgggttaa 964  Q
    |||| ||||||||||||| ||||||||||||||||||||||    
T  8278313 agtcccaagccaataccatcagaccaacccaagtgggttaa 8278353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 888 - 958
Target Start/End: Complemental strand, 16436692 - 16436622
Alignment:
Q  888 aatcgaacatgagacatcggaaaggagcacaatcctagtctcaagccaataccaccagaccaacccaagtg 958  Q
    ||||||||||||||| | |   ||||||||| ||| |||| |||||||||||||| || ||||||||||||    
T  16436692 aatcgaacatgagaccttgaggaggagcacactccaagtcccaagccaataccactaggccaacccaagtg 16436622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 886 - 962
Target Start/End: Complemental strand, 16773884 - 16773807
Alignment:
Q  886 agaatcgaacatgagacatcggaaaggagcacaatcctag-tctcaagccaataccaccagaccaacccaagtgggtt 962  Q
    |||||||||| |||||| |||   ||||||||| ||| || || |||| |||||||||||||||||| ||||||||||    
T  16773884 agaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccagaccaactcaagtgggtt 16773807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 962
Target Start/End: Complemental strand, 21589321 - 21589288
Alignment:
Q  929 caagccaataccaccagaccaacccaagtgggtt 962  Q
    ||||||||||||||||| ||||||||||||||||    
T  21589321 caagccaataccaccaggccaacccaagtgggtt 21589288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 962
Target Start/End: Original strand, 30883241 - 30883274
Alignment:
Q  929 caagccaataccaccagaccaacccaagtgggtt 962  Q
    |||||||||||||| |||||||||||||||||||    
T  30883241 caagccaataccactagaccaacccaagtgggtt 30883274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 962
Target Start/End: Complemental strand, 34984839 - 34984806
Alignment:
Q  929 caagccaataccaccagaccaacccaagtgggtt 962  Q
    |||||||||||||| |||||||||||||||||||    
T  34984839 caagccaataccactagaccaacccaagtgggtt 34984806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 924 - 962
Target Start/End: Complemental strand, 19016069 - 19016031
Alignment:
Q  924 agtctcaagccaataccaccagaccaacccaagtgggtt 962  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  19016069 agtctcaagccaataccatcagaccaacccaagtgggtt 19016031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 882 - 962
Target Start/End: Original strand, 29197371 - 29197452
Alignment:
Q  882 gggaagaatcgaacatgagacatcggaaaggagcacaat-cctagtctcaagccaataccaccagaccaacccaagtgggtt 962  Q
    ||||||||||||||||||||||||    ||||||||| | || |||| |||| |||||||||||  ||||||||||||||||    
T  29197371 gggaagaatcgaacatgagacatcaaggaggagcacactcccaagtcccaagtcaataccaccaagccaacccaagtgggtt 29197452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 925 - 962
Target Start/End: Original strand, 30808686 - 30808723
Alignment:
Q  925 gtctcaagccaataccaccagaccaacccaagtgggtt 962  Q
    |||||||||||||| |||||||||||||||||||||||    
T  30808686 gtctcaagccaatatcaccagaccaacccaagtgggtt 30808723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 926 - 962
Target Start/End: Complemental strand, 35916122 - 35916086
Alignment:
Q  926 tctcaagccaataccaccagaccaacccaagtgggtt 962  Q
    ||||||| |||||||||||||||||||||||||||||    
T  35916122 tctcaagtcaataccaccagaccaacccaagtgggtt 35916086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 962
Target Start/End: Original strand, 3697442 - 3697475
Alignment:
Q  929 caagccaataccaccagaccaacccaagtgggtt 962  Q
    ||||||||||||| ||||||||||||||||||||    
T  3697442 caagccaataccatcagaccaacccaagtgggtt 3697475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 926 - 963
Target Start/End: Original strand, 5147719 - 5147756
Alignment:
Q  926 tctcaagccaataccaccagaccaacccaagtgggtta 963  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  5147719 tctcaagtcaataccactagaccaacccaagtgggtta 5147756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 886 - 962
Target Start/End: Complemental strand, 35710468 - 35710391
Alignment:
Q  886 agaatcgaacatgagacatcggaaaggagcacaatcct-agtctcaagccaataccaccagaccaacccaagtgggtt 962  Q
    ||||||||||||||||| ||  | |||| |||| |||| ||||||||| |||| |||||||| |||| ||||||||||    
T  35710468 agaatcgaacatgagacctcaaagaggaacacactcctaagtctcaagtcaatcccaccagatcaactcaagtgggtt 35710391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 962
Target Start/End: Complemental strand, 37480108 - 37480075
Alignment:
Q  929 caagccaataccaccagaccaacccaagtgggtt 962  Q
    ||||||||||||||||| ||||||||||||||||    
T  37480108 caagccaataccaccaggccaacccaagtgggtt 37480075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 925 - 962
Target Start/End: Original strand, 7765 - 7802
Alignment:
Q  925 gtctcaagccaataccaccagaccaacccaagtgggtt 962  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  7765 gtctcaagccaataccaccagaccaacccaagttggtt 7802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 925 - 962
Target Start/End: Complemental strand, 30579372 - 30579335
Alignment:
Q  925 gtctcaagccaataccaccagaccaacccaagtgggtt 962  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  30579372 gtctcaagccaataccaccaggccaacccaagtgggtt 30579335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 886 - 966
Target Start/End: Complemental strand, 43590984 - 43590903
Alignment:
Q  886 agaatcgaacatgagacatcggaaaggagcacaatccta-gtctcaagccaataccaccagaccaacccaagtgggttaatc 966  Q
    |||||||||| |||||||| |   ||||||||| ||| | ||| ||||||||||||||||| ||||||||| ||||||||||    
T  43590984 agaatcgaacctgagacattgaggaggagcacactcccaagtcccaagccaataccaccaggccaacccaactgggttaatc 43590903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 929 - 965
Target Start/End: Complemental strand, 22760896 - 22760860
Alignment:
Q  929 caagccaataccaccagaccaacccaagtgggttaat 965  Q
    |||| ||||||||||||||||||||||||||||||||    
T  22760896 caagtcaataccaccagaccaacccaagtgggttaat 22760860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 924 - 962
Target Start/End: Complemental strand, 2446346 - 2446308
Alignment:
Q  924 agtctcaagccaataccaccagaccaacccaagtgggtt 962  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  2446346 agtcccaagccaataccatcagaccaacccaagtgggtt 2446308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 924 - 962
Target Start/End: Complemental strand, 41487400 - 41487362
Alignment:
Q  924 agtctcaagccaataccaccagaccaacccaagtgggtt 962  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  41487400 agtcccaagccaataccaccaggccaacccaagtgggtt 41487362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 962
Target Start/End: Complemental strand, 4161321 - 4161288
Alignment:
Q  929 caagccaataccaccagaccaacccaagtgggtt 962  Q
    ||||||||||||||||||||||||||| ||||||    
T  4161321 caagccaataccaccagaccaacccaaatgggtt 4161288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 886 - 962
Target Start/End: Original strand, 20335830 - 20335907
Alignment:
Q  886 agaatcgaacatgagacatcggaaaggagcacaatccta-gtctcaagccaataccaccagaccaacccaagtgggtt 962  Q
    |||||||||| |||||| |||   ||||||||| ||| | ||| |||||||||||| | |||||||||||||||||||    
T  20335830 agaatcgaacctgagacctcgaggaggagcacactcccaagtcccaagccaatacctctagaccaacccaagtgggtt 20335907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 962
Target Start/End: Complemental strand, 22702273 - 22702240
Alignment:
Q  929 caagccaataccaccagaccaacccaagtgggtt 962  Q
    |||||||||||||||||||||| |||||||||||    
T  22702273 caagccaataccaccagaccaatccaagtgggtt 22702240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 962
Target Start/End: Original strand, 22932754 - 22932787
Alignment:
Q  929 caagccaataccaccagaccaacccaagtgggtt 962  Q
    |||||||||||||||| |||||||||||||||||    
T  22932754 caagccaataccaccataccaacccaagtgggtt 22932787  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 910 - 958
Target Start/End: Complemental strand, 23595782 - 23595733
Alignment:
Q  910 aggagcacaatcctag-tctcaagccaataccaccagaccaacccaagtg 958  Q
    ||||||||| ||| || ||||||| |||||||||||||||||||||||||    
T  23595782 aggagcacactccgagatctcaagtcaataccaccagaccaacccaagtg 23595733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 926 - 963
Target Start/End: Complemental strand, 24513833 - 24513796
Alignment:
Q  926 tctcaagccaataccaccagaccaacccaagtgggtta 963  Q
    ||||||||||||||||| || |||||||||||||||||    
T  24513833 tctcaagccaataccactaggccaacccaagtgggtta 24513796  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 962
Target Start/End: Complemental strand, 43215217 - 43215184
Alignment:
Q  929 caagccaataccaccagaccaacccaagtgggtt 962  Q
    |||||||||||||| |||||||||||||||||||    
T  43215217 caagccaataccactagaccaacccaagtgggtt 43215184  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 962
Target Start/End: Original strand, 48125217 - 48125250
Alignment:
Q  929 caagccaataccaccagaccaacccaagtgggtt 962  Q
    |||||||| |||||||||||||||||||||||||    
T  48125217 caagccaacaccaccagaccaacccaagtgggtt 48125250  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 925 - 962
Target Start/End: Complemental strand, 37400311 - 37400274
Alignment:
Q  925 gtctcaagccaataccaccagaccaacccaagtgggtt 962  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  37400311 gtctcaagccaataccaccagaccaacccaagttggtt 37400274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 925 - 962
Target Start/End: Complemental strand, 40257436 - 40257399
Alignment:
Q  925 gtctcaagccaataccaccagaccaacccaagtgggtt 962  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  40257436 gtctcaagccaataccaccaggccaacccaagtgggtt 40257399  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 452 - 543
Target Start/End: Original strand, 24609194 - 24609285
Alignment:
Q  452 cggattgtgcttggtgtgtgggaatgataaaggaggaagatcatc-ttttttataggtgtggttttgccggatcggtttggtatcatattttc 543  Q
    ||||||||| ||||| ||||||| ||||| | ||||| ||||||| |||||| ||||||||| | ||| |||| |||||| ||||||||||||    
T  24609194 cggattgtgtttggtatgtgggattgatagaagaggacgatcatctttttttgtaggtgtgg-tctgctggattggtttgttatcatattttc 24609285  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 886 - 964
Target Start/End: Original strand, 18037612 - 18037691
Alignment:
Q  886 agaatcgaacatgagacatcggaaaggagcacaatccta-gtctcaagccaataccaccagaccaacccaagtgggttaa 964  Q
    |||||||||| |||||  ||| ||||||||||| ||| | ||| ||| |||||| || ||||||||||||||||||||||    
T  18037612 agaatcgaacttgagatctcgaaaaggagcacactcccaagtcccaaaccaatatcatcagaccaacccaagtgggttaa 18037691  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 924 - 962
Target Start/End: Complemental strand, 21694484 - 21694446
Alignment:
Q  924 agtctcaagccaataccaccagaccaacccaagtgggtt 962  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  21694484 agtctcaagccaataccaccaggtcaacccaagtgggtt 21694446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 910 - 959
Target Start/End: Original strand, 26232409 - 26232459
Alignment:
Q  910 aggagcacaatcctag-tctcaagccaataccaccagaccaacccaagtgg 959  Q
    ||||||||| ||| || ||||||||||||||||| ||||||||||||||||    
T  26232409 aggagcacactcccagatctcaagccaataccactagaccaacccaagtgg 26232459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 926 - 964
Target Start/End: Complemental strand, 44961801 - 44961763
Alignment:
Q  926 tctcaagccaataccaccagaccaacccaagtgggttaa 964  Q
    |||||||| ||||||||| ||||||||||||||||||||    
T  44961801 tctcaagctaataccacctgaccaacccaagtgggttaa 44961763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 962
Target Start/End: Complemental strand, 2220005 - 2219972
Alignment:
Q  929 caagccaataccaccagaccaacccaagtgggtt 962  Q
    |||||||||||||||||| |||||||||||||||    
T  2220005 caagccaataccaccagaacaacccaagtgggtt 2219972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 962
Target Start/End: Original strand, 19528370 - 19528403
Alignment:
Q  929 caagccaataccaccagaccaacccaagtgggtt 962  Q
    ||||||||||||||||| ||||||||||||||||    
T  19528370 caagccaataccaccaggccaacccaagtgggtt 19528403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 962
Target Start/End: Complemental strand, 37047018 - 37046985
Alignment:
Q  929 caagccaataccaccagaccaacccaagtgggtt 962  Q
    |||||||| |||||||||||||||||||||||||    
T  37047018 caagccaacaccaccagaccaacccaagtgggtt 37046985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 924 - 965
Target Start/End: Original strand, 52116819 - 52116860
Alignment:
Q  924 agtctcaagccaataccaccagaccaacccaagtgggttaat 965  Q
    |||| ||||||||||||||||| ||||||||| |||||||||    
T  52116819 agtcccaagccaataccaccaggccaacccaactgggttaat 52116860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 929 - 964
Target Start/End: Original strand, 15364 - 15399
Alignment:
Q  929 caagccaataccaccagaccaacccaagtgggttaa 964  Q
    |||||||| |||||||||||||||||||||||||||    
T  15364 caagccaacaccaccagaccaacccaagtgggttaa 15399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 926 - 964
Target Start/End: Original strand, 41673 - 41711
Alignment:
Q  926 tctcaagccaataccaccagaccaacccaagtgggttaa 964  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  41673 tctcaagccaataccactaggccaacccaagtgggttaa 41711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 929 - 959
Target Start/End: Original strand, 38945 - 38975
Alignment:
Q  929 caagccaataccaccagaccaacccaagtgg 959  Q
    |||||||||||||||||||||||||||||||    
T  38945 caagccaataccaccagaccaacccaagtgg 38975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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