View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13108_low_12 (Length: 508)
Name: NF13108_low_12
Description: NF13108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13108_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 27762294 - 27761791
Alignment:
| Q |
1 |
ccctatgatttgacaatggtaacaaaaatcagggagcctatcataacgaacttttacacataaagcattaccttccctctaaactgggatttcataaaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
27762294 |
ccctatgatttgacaatggtaacaaaaatcagggagcatatcataacgaacttttacacataaagcattaccttccctctagacccggatttcataaaaa |
27762195 |
T |
|
| Q |
101 |
attcgtttcgacaaatccatatcaaccagaatcctcccatagggaccaaaggccctattttaagttggaccatccaaagttaatggtatcccaacaacac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27762194 |
tttcgtttcgacaaatccatatcaaccagaatcctcccatagggaccaaaggccctattttaagttggaccatccaaagttaatggtatcccaacaacac |
27762095 |
T |
|
| Q |
201 |
tagctatttcaaaattttctttccaatattcttttggaaaatccattatacaaatccaaatatgtgcatgagtttgatttcgtgtgctatggttaaaatt |
300 |
Q |
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| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27762094 |
tggctatttcaaaattttctttccaatatgcttttggaaaatccattatacaaatccaaatatgtgcatgggtttgatttcgtgtgctatggttaaaatt |
27761995 |
T |
|
| Q |
301 |
cc-ttactattgtgatagtcgaaggcacctgattttaaactcattgtgccgctagcccagaccaaacataaatcatcataatttaaaaattagaaatcgt |
399 |
Q |
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|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
27761994 |
cctttactattgtgatagtcgaagccacctgattttaaactcattgtgccgctagcccagaccaaacataaatcgtcataatttaaaaattagaaatcat |
27761895 |
T |
|
| Q |
400 |
aaaacctacatccgagagagaacatttttcatttacctgtagtgttccacaacttggtaagcttctgaagcaaatcctttgatatgtatgacttatcccc |
499 |
Q |
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||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27761894 |
aaaacctacatccaagagagaacctttttcatttaccagtagtgttccacaacttggtaagcttctgaagcaaatcctttgatatgtatgacttatcccc |
27761795 |
T |
|
| Q |
500 |
tttg |
503 |
Q |
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|||| |
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| T |
27761794 |
tttg |
27761791 |
T |
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