View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13108_low_16 (Length: 435)
Name: NF13108_low_16
Description: NF13108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13108_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 6e-81; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 242 - 418
Target Start/End: Original strand, 2597779 - 2597954
Alignment:
| Q |
242 |
gtgctaccagtatcgcttctcatcggctagaggaacatcagctatagctctctcataaacctccatagttctttccttattcccgacactctctttccat |
341 |
Q |
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||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2597779 |
gtgctgccagtatcgattctcatcggctagaggaacattagctatagctctctcataaacctccatagttctttccttattcccgacactctctttccat |
2597878 |
T |
|
| Q |
342 |
cttatataatcaaaccacaaatcataattcaacagatttttcctcacttcatcttcatattgaaaccttctcttccc |
418 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2597879 |
cttatataatcaaacca-taatcataattcaacagatttttcctcacttcatcttcatattgaaaccttctcttccc |
2597954 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 2597549 - 2597677
Alignment:
| Q |
12 |
acagatatataaacacaatgctcggaggttcagaaaaggctgcttatctgtacacgtctcttgttcgctcaatatctccaacattaagttcttcataaag |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2597549 |
acagatatataaacacaatgctcggaggttcagaaaaggctgcttacctgtacacgtctcttgttcgctcaatatctccaacattaagttcttcataaag |
2597648 |
T |
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| Q |
112 |
tgcataattaatcctaagttacacatgga |
140 |
Q |
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||||||| |||||| |||||||||||||| |
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| T |
2597649 |
tgcataactaatccaaagttacacatgga |
2597677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 271 - 391
Target Start/End: Original strand, 49276430 - 49276550
Alignment:
| Q |
271 |
gaggaacatcagctatagctctctcataaacctccatagttctttccttattcccgacactctctttccatcttatataatcaaaccacaaatcataatt |
370 |
Q |
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||||||||| || |||||||||||||||||||||| ||||| ||||||||| ||| ||||| |||| | ||| |||||| |||||||| ||||||| || |
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| T |
49276430 |
gaggaacattagatatagctctctcataaacctccctagttttttccttatcccctacactttcttccaatcgtatatattcaaaccaggaatcatagtt |
49276529 |
T |
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| Q |
371 |
caacagatttttcctcacttc |
391 |
Q |
| |
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|| |||||| ||||||||| |
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| T |
49276530 |
gaaaggattttccctcacttc |
49276550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 349
Target Start/End: Original strand, 49279987 - 49280065
Alignment:
| Q |
271 |
gaggaacatcagctatagctctctcataaacctccatagttctttccttattcccgacactctctttccatcttatata |
349 |
Q |
| |
|
||||||||| || |||||||||||||||||||||| ||||| |||||| || ||| ||||| |||| | ||| |||||| |
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| T |
49279987 |
gaggaacattagatatagctctctcataaacctccctagttttttcctcatcccccacactttcttccaatcgtatata |
49280065 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 5e-63; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 248 - 418
Target Start/End: Complemental strand, 34788561 - 34788391
Alignment:
| Q |
248 |
ccagtatcgcttctcatcggctagaggaacatcagctatagctctctcataaacctccatagttctttccttattcccgacactctctttccatcttata |
347 |
Q |
| |
|
||||||||||||||| || |||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||| |
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| T |
34788561 |
ccagtatcgcttctcctcagctagaggtacattagctatagctctctcataaacctccctagttctttccttattcccgacactctcttccaatcttata |
34788462 |
T |
|
| Q |
348 |
taatcaaaccacaaatcataattcaacagatttttcctcacttcatcttcatattgaaaccttctcttccc |
418 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| | |||||||||||||| ||||||||||||||||| |
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| T |
34788461 |
taatcaaaccacaaatcataattcaatggatttttcataacttcatcttcatactgaaaccttctcttccc |
34788391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 39 - 135
Target Start/End: Complemental strand, 34788769 - 34788673
Alignment:
| Q |
39 |
gttcagaaaaggctgcttatctgtacacgtctcttgttcgctcaatatctccaacattaagttcttcataaagtgcataattaatcctaagttacac |
135 |
Q |
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||||| ||||||||||||| ||||||| ||||||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
34788769 |
gttcacaaaaggctgcttacttgtacacatctcttgtttgctccatatctccagcatcaagttcttcataaagtgcataattaatcctaagatacac |
34788673 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 248 - 418
Target Start/End: Original strand, 2292633 - 2292803
Alignment:
| Q |
248 |
ccagtatcgcttctcatcggctagaggaacatcagctatagctctctcataaacctccatagttctttccttattcccgacactctctttccatcttata |
347 |
Q |
| |
|
||||||||||||||| || || ||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||| | |||||||| |
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| T |
2292633 |
ccagtatcgcttctcctcagcaggaggaacattggctatagctctctcataaacctccctagttctttccttattcccaacactctcttccaatcttata |
2292732 |
T |
|
| Q |
348 |
taatcaaaccacaaatcataattcaacagatttttcctcacttcatcttcatattgaaaccttctcttccc |
418 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2292733 |
taatcaaaccatgaatcataattcaacggatttttcctcacttcatcttcatactgaaaccttctcttccc |
2292803 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 2292397 - 2292517
Alignment:
| Q |
12 |
acagatatataaacacaatgctcggaggttcagaaaaggctgcttatctgtacacgtctcttgttcgctcaatatctccaacattaagttcttcataaag |
111 |
Q |
| |
|
||||| || ||||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||||||| || |||||| ||| ||||||||||| || |
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| T |
2292397 |
acagagatttaaacacaatgcttggaagttcacaaaaggctgcttacttgtacacgtctcttgttcgctccatgtctccagcatcgagttcttcatagag |
2292496 |
T |
|
| Q |
112 |
tgcataattaatcctaagtta |
132 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
2292497 |
tgcataattaatcctaagtta |
2292517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 271 - 418
Target Start/End: Complemental strand, 24602246 - 24602097
Alignment:
| Q |
271 |
gaggaacatcagctatagctctctcataaacctccatagttctttccttattcccgacactctctttccatct----tatataatcaaaccacaaatcat |
366 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||| | ||| |||||||||||| |||| ||||| | || | ||||||||||||||| |||||| |
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| T |
24602246 |
gaggaacattagctacagctctctcataaacctccttggttgtttccttattcctgaca--ctcttccaatattatatatataatcaaaccaagaatcat |
24602149 |
T |
|
| Q |
367 |
aattcaacagatttttcctcacttcatcttcatattgaaaccttctcttccc |
418 |
Q |
| |
|
||||||| ||||| ||||| ||||||||| | ||||||||||||||||| |
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|
| T |
24602148 |
aattcaagcgatttatcctcgcttcatctttggactgaaaccttctcttccc |
24602097 |
T |
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