View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13108_low_17 (Length: 434)
Name: NF13108_low_17
Description: NF13108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13108_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 6 - 419
Target Start/End: Original strand, 277484 - 277897
Alignment:
| Q |
6 |
cataggaatggataaatatagtttgctatttctgtgctttcatctttatcctatttattattattagcatttctctctgnnnnnnnccctctcaattcaa |
105 |
Q |
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| T |
277484 |
cataggaatggataaatatagtttgctatttctgtgctttcatctttatcctatttattattattagcatttctctctgtttttttccctctcaattcaa |
277583 |
T |
|
| Q |
106 |
cttataataactaacttcccctaacaaaattgaatgcacatttgacgtagaaaataactttctcctctcctatttattattttatttagtacgtaattaa |
205 |
Q |
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| T |
277584 |
cttataataactaacttcccctaacaaaattgaatgcacatttgacgtagaaaataactttctcctctcctatttattattttatttagtacgtaattaa |
277683 |
T |
|
| Q |
206 |
aaattgatgacattgcattacattcttaatcaaattcttatccacacagacacggcattaatttttgtttagcaatggacaactccaattcaaatgcaaa |
305 |
Q |
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| T |
277684 |
aaattgatgacattgcattacattcttaatcaaattcttatccacacagacacggcattgacttttgtttagcaatggacaactccaattcaaatgcaaa |
277783 |
T |
|
| Q |
306 |
acactgttcctcaaataattactattactaattaagttgaggaatccaaaaaatttagtaatagtttcctctttggattccagaagaagcatgtcattat |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
277784 |
acactgttcctcaaataattactattactaattaagttgaggaatccaaaaaatttagtaatagtttcctctttggattccagaagaggcatgtcattat |
277883 |
T |
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| Q |
406 |
tggatggtacaatg |
419 |
Q |
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| T |
277884 |
tggatggtacaatg |
277897 |
T |
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