View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13108_low_18 (Length: 408)
Name: NF13108_low_18
Description: NF13108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13108_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 10676893 - 10677268
Alignment:
| Q |
19 |
aagtaataggcaagatagctagtaatggatagaaaggatgtcttaggatgaatctgaaatggagcccgactttgagggttccttaattggaggaaaccaa |
118 |
Q |
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| T |
10676893 |
aagtaataggcaagatagctagcaatggatagaaaggatgtcttaggatgaatctgaaatggagccggactttgagggttccttaattggaggaaaccaa |
10676992 |
T |
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| Q |
119 |
ggagaacataaaaggaaaaagcaactaggttgtgcaaatcagaattgttttcctttgttcttgagagaagatcaagattgttatcttctttctttcttgc |
218 |
Q |
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| T |
10676993 |
ggagaacataaaaggaaaaagcaactaggttgtgcaaatcagaattgttttcttttgttcttgagagaagatcaagattgttatcttctttctttcttgc |
10677092 |
T |
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| Q |
219 |
tatttggacgttacttaatactatataattgaaaacaacttgagtaggtaatgatctcctcaaatggggtcttcctctactcacataaacatccatgtta |
318 |
Q |
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| T |
10677093 |
tatttggacgttacttaatactatataattgaaaacaacttgagtaggtaatgatctcctcaaatggggtcttcctctactcacataaacatccatgtta |
10677192 |
T |
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| Q |
319 |
taagaggnnnnnnnngtgacaagaaaatgagatcgaatttaatgaccttggctaggtattatatatacaagctgat |
394 |
Q |
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| T |
10677193 |
taagaggttttttttgtgacaagaaaaagagatcgaatttaatgaccttggctaggtattatatatacaagctgat |
10677268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 204 - 314
Target Start/End: Original strand, 10673863 - 10673973
Alignment:
| Q |
204 |
ttctttctttcttgctatttggacgttacttaatactatataattgaaaacaacttgagtaggtaatgatctcctcaaatggggtcttcctctactcaca |
303 |
Q |
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| T |
10673863 |
ttcttgctttctagttatttggacgttacttaatactatatgattgaaaacaatttgagtatgtaacgatctcctcaaatggggtcttcctctactcaca |
10673962 |
T |
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| Q |
304 |
taaacatccat |
314 |
Q |
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| T |
10673963 |
tcaacatccat |
10673973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 169
Target Start/End: Original strand, 10673737 - 10673860
Alignment:
| Q |
46 |
gatagaaaggatgtcttaggatgaatctgaaatggagcccgactttgagggttccttaattggaggaaaccaaggagaacataaaaggaaaaagcaacta |
145 |
Q |
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|||| |||||| ||||||||||||| ||||||||||| | ||| |||| || ||||||||||||||||| ||||||||| || || |||| ||| | |
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| T |
10673737 |
gatataaaggacgtcttaggatgaacctgaaatggagtggggttttaagggctcattaattggaggaaaccagggagaacatgaatggcaaaactaacaa |
10673836 |
T |
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| Q |
146 |
ggttgtgcaaatcagaattgtttt |
169 |
Q |
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| T |
10673837 |
gggtgtgcaaatcaagattgtttt |
10673860 |
T |
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