View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13108_low_19 (Length: 374)
Name: NF13108_low_19
Description: NF13108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13108_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 9 - 197
Target Start/End: Original strand, 48888179 - 48888367
Alignment:
| Q |
9 |
agcatatatgcagttagttggagtcctgacagtaaacaggtgaactccaggttgtgtttaaatgttactgttttattatgttgacattgataaaaatttc |
108 |
Q |
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| T |
48888179 |
agcatatatgcagttagttggagtcgtgacagtaaacaggtgaactccaggttgtgtttgaatgttactgttttattatgttgacattgataaaaatttc |
48888278 |
T |
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| Q |
109 |
gtcttttttcttttggccagaattgtatataagattgcaatgtgaaatcgattctgtactggtttaacattcttgagagcttaatcacc |
197 |
Q |
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| T |
48888279 |
gtcttttttcttttggccagaattgtatataagattgcaatgtgaaatcgattctgtactggtttaacattgttgagagcttaatcacc |
48888367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 256 - 367
Target Start/End: Original strand, 48888425 - 48888536
Alignment:
| Q |
256 |
taaggaggaacatgttatgaatttatttgtgctattttagatgttcagtgctgctatttacattctagtttaaattaagtnnnnnnnnttacaggttctt |
355 |
Q |
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| T |
48888425 |
taaggaggaacatgttatgaatttatttgtgctattttagatgttcagtactgctatttacattctagtttaaattaagtaaaaaaaattacaggttctt |
48888524 |
T |
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| Q |
356 |
actgtctctgct |
367 |
Q |
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| T |
48888525 |
actgtctctgct |
48888536 |
T |
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